| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2377 |
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| Symbol | |
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| ID | 4921904 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2779187 |
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| End bp | 2781196 |
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| Gene Length | 2010 bp |
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| Protein Length | 669 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640163967 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001094502 |
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| Protein GI | 127513305 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000760862 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000201736 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGCAAGCCA TACAAGACGA GATTAAACAG TTAACCGACG AGCTTAATCA GCACAACTAT
CGCTACTATG TCGATGACGC GCCCTCTATT CCCGACGCCG AATATGACCG TCTGATGCGT
CGCCTGCAGG AGCTGGAGGC CGAGCATCCC GAGCTGGCGC TGGCCGACTC GCCAACCCAG
AGAGTCGGCG GCGAGGCCCT GAGCAAGTTT AATCAGGTGA CTCACCTCAA GCCCATGCTG
AGCCTGGATA ACGTCTTCAG CGAAGAGGAG TTCAACGCCT TCTATAAGCG TGTCGGCGAT
AAGCTGCCGG ATACGCCAGC ATTTTGCTGT GAGCCTAAAC TCGACGGTCT GGCGGTGAGT
ATCCTCTATC GCGATGGCGT GTTTGAGCGC GCCGCCACCC GCGGCGATGG CACTGTCGGT
GAGGACATTA CCGAGAACGT GCGCACCATC AAATCTGTGC CATTGAGACT CAGAGGCAGC
GGTTTTCCGC CACTGCTAGA GGTGCGCGGC GAAGTCTTTA TGCCTAAGGC AGCTTTCGAG
GCGGTCAACG ATAAGGCCCG CGCCAAGGGC GAGAAGCTCT TCGTCAACCC GCGTAATGCC
GCCGCCGGTA GCCTGCGTCA GCTAGACAGC AAGATCACCG CCAGTCGCTC CTTGGCATTC
TATGCCTACG CTCTGGGCGT GGTGGAGCCA GAAACCTGGC CGCTGGCAGC CAGCCATTTC
GAGCAGCTGG TGCAGCTTAA AGAGTGGGGC TGTCCGGTGA GCAGTGAAGT CAAGGTATGT
GCGGATATCC CCAGTGTGCT GGCCTATTAT CAGGACATAC TGACCCGTCG TAGCGAGCTG
GCCTATGAGA TAGATGGCGT GGTGCTTAAG GTGAACGATA TCGCCCAGCA GCAGACTCTT
GGTTTCGTGG CTAAGGCGCC TCGCTGGGCC ACCGCCTATA AGTTTCCGGC CCAGGAGGAG
ATCACCCAGC TCGAAGGAGT TGACTTCCAG GTGGGGCGTA CCGGCGCCGT GACCCCGGTT
GCGCGCCTGC AGCCTGTCTT TGTCGGTGGG GTTACGGTCT CCAACGCCAC CTTGCATAAC
GCCGATGAGA TCGCCCGTCT CGGGGTGATG ATAGGCGATA GCGTGATCAT CCGCCGCGCC
GGCGATGTGA TCCCTCAGGT CGTTGCCGTG GTGCCCGAGA AGCGCCCGAG TGATGCCCAG
GCGATCCAGT TCCCGCCGCA ATGCCCCGTG TGTGGCAGCG ACGTAGAGCG CGTCGAGGGT
GAAGCGGTTG CCCGTTGTAC CGGCGGCCTC GTTTGTGAGG CCCAGCGTAA GGAAGCAATC
AAGCACTTCG CCTCTCGCAA GGCGTTAGAT ATCGATGGCA TGGGTGACAA GGTGGTGGAG
CAGCTGATCG ATAAGGAGCT GGTGGCCAGC CCTGCGGATC TCTTCAAGCT GACCGCCTCG
GCGATCACTA TGCTGGATCG CATGGGGATG AAGTCAGCCA CTAATTTGGT CAATGCCCTG
GAAGCGGCCA AGCAAACTAC CTTTGCCCGT TTCCTCTATT CGCTGGGGAT CAGGGAGGTG
GGCGAAGCCA CCGCCGCCAA CCTAGCTAAC TATTTCAAGA CTCTTGAGCA TCTCAAGCAG
GCGGACGCCG AGACCTTTAT GAAGGTTGAC GATGTCGGGG TGATCGTCGC CCAGCATCTG
GTGCACTTCT TCGAGCAGCC CCATAACCTT GAGGTGATCG ATGGCCTGCT GCAGGCCGGT
GTGCACTGGC CCGACATCGA AGAGGTTGCC GAAGAGGCGC TCTCCCTGAA GGGGCAGACC
TGGGTATTAA CCGGCACCCT GACGCAACTC AATCGCAACG ATGCCAAGGC TAAGCTGCAG
GCATTAGGTG CCAAGGTGGC AGGCAGCGTC TCGAAAAATA CCGATTGCTT GGTTGCCGGA
GAGGCCGCTG GTTCTAAGTT GACCAAGGCG CAGGAGCTTG GAGTTAAGGT GATCGATGAG
GCAGAGCTCT TGGCTATCCT AGGCTCTTAA
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| Protein sequence | MQAIQDEIKQ LTDELNQHNY RYYVDDAPSI PDAEYDRLMR RLQELEAEHP ELALADSPTQ
RVGGEALSKF NQVTHLKPML SLDNVFSEEE FNAFYKRVGD KLPDTPAFCC EPKLDGLAVS
ILYRDGVFER AATRGDGTVG EDITENVRTI KSVPLRLRGS GFPPLLEVRG EVFMPKAAFE
AVNDKARAKG EKLFVNPRNA AAGSLRQLDS KITASRSLAF YAYALGVVEP ETWPLAASHF
EQLVQLKEWG CPVSSEVKVC ADIPSVLAYY QDILTRRSEL AYEIDGVVLK VNDIAQQQTL
GFVAKAPRWA TAYKFPAQEE ITQLEGVDFQ VGRTGAVTPV ARLQPVFVGG VTVSNATLHN
ADEIARLGVM IGDSVIIRRA GDVIPQVVAV VPEKRPSDAQ AIQFPPQCPV CGSDVERVEG
EAVARCTGGL VCEAQRKEAI KHFASRKALD IDGMGDKVVE QLIDKELVAS PADLFKLTAS
AITMLDRMGM KSATNLVNAL EAAKQTTFAR FLYSLGIREV GEATAANLAN YFKTLEHLKQ
ADAETFMKVD DVGVIVAQHL VHFFEQPHNL EVIDGLLQAG VHWPDIEEVA EEALSLKGQT
WVLTGTLTQL NRNDAKAKLQ ALGAKVAGSV SKNTDCLVAG EAAGSKLTKA QELGVKVIDE
AELLAILGS
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