| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2348 |
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| Symbol | |
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| ID | 4922075 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2742497 |
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| End bp | 2743171 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163933 |
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| Product | two component transcriptional regulator |
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| Protein accession | YP_001094473 |
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| Protein GI | 127513276 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000162881 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGAATTT TGGTCGTTGA AGATGATCCC CTACTGTCCC ACCACCTCAA GGTACAACTG
AGCGAGTTAG GCAACCAGGT TCAAGTCGCC CAGACCGCCA AAGAAGGCTT CTATCAAGCG
ACTAACTATC CCATAGACAT TGCCATCATA GACCTTGGCC TGCCGGATCA AGACGGTATC
TCGCTGATCC AGTCGCTGCG CAAGGCCGAA CTCAAGGCGC CTATTCTCAT CCTCACCGCC
CGGGTTAACT GGCAGGATAA GGTCGAGGGG CTCAACGCCG GCGCCGACGA CTATCTGGTG
AAGCCCTTCC AAAAAGAGGA GCTGGTCGCC AGACTCGACG CCCTGGTGCG TCGCAGTGCG
GGCTTCGTCA AACCGCAGAT CACCAGCGGA CCGTTGGAAC TGGACTTGGC CGCCAAACAG
GTCACGCTGG ATCAGAGCCC CATGGAGGTG ACCGCGTTCG AATATCAGAT CCTTGAATAC
CTGATGCGCC ACTGTCACGA GGTGGTGGCC AAACAGCGAC TACTGGATGT GATCTATGGC
GATAAGGAAG GCGATCCCAA CACCATTGAA GTAATGGTCA GCCGTCTGCG CAAGAAACTG
ACCAAGGGCG GACTAGAAAA CCCCATTGCC ACCATTCGTG GTCAGGGCTA CAAGTTTAAT
CTGCCATGCA AATAA
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| Protein sequence | MRILVVEDDP LLSHHLKVQL SELGNQVQVA QTAKEGFYQA TNYPIDIAII DLGLPDQDGI
SLIQSLRKAE LKAPILILTA RVNWQDKVEG LNAGADDYLV KPFQKEELVA RLDALVRRSA
GFVKPQITSG PLELDLAAKQ VTLDQSPMEV TAFEYQILEY LMRHCHEVVA KQRLLDVIYG
DKEGDPNTIE VMVSRLRKKL TKGGLENPIA TIRGQGYKFN LPCK
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