| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2337 |
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| Symbol | tgt |
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| ID | 4922064 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2730576 |
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| End bp | 2731700 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640163922 |
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| Product | queuine tRNA-ribosyltransferase |
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| Protein accession | YP_001094462 |
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| Protein GI | 127513265 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
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| TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00144843 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAATTTG AATTAGATAC AACCGATGGT CGCGCGCGTC GCGGTCGCTT AGTGTTCGAA
CGCGGTACGG TAGAGACCCC GGCATTCATG CCTGTGGGCA CCTACGGTAC GGTAAAAGGG
ATGACGCCTG AAGAAGTGCG CGCCACGGGC GCCGATATTC TGCTGGGGAA CACCTTTCAC
CTTTGGTTAC GTCCTGGTGA AGAGATCATG CGCAAGCATG GCGATCTGCA TGACTTCATG
AATTGGCAGC GTCCTATCTT AACCGATTCA GGCGGATTCC AGGTATTTAG CCTGGGTGAC
ATTCGTAAGA TCACCGAAGA GGGCGTGCAT TTCCGCTCGC CAATCAACGG CGAGAAGATC
TTCATGGACG CGGAAAAGTC GATGCAGATC CAATACTCGC TAGGCTCAGA TGTGGTGATG
ATCTTCGACG AATGTACGCC ATACCCGGCG ACCCACGACG AGGCACGCAA GTCGATGCAG
ATGTCACTGC GTTGGGCACA GCGTTCACGC GATGAGTTCG ACCGTCTGGA AAACCCTAAC
TCTCTGTTCG GGATCATTCA GGGCAGTGTG TATGAAGACC TGCGCGATGA GAGCCTTAAA
GGTTTGTTAG AGATAGGATA CGACGGTTAT GCCGTCGGCG GTTTGGCGGT TGGGGAGCCT
AAGGAAGATA TGCACCGTAT TCTTGAGCAT GTCTGCCCAC AGATCCCGGC CGATAAGCCG
CGTTACTTGA TGGGGGTAGG TAAACCGGAG GATCTCGTTG AGGGGGTACG TAGAGGTGTC
GACATGTTCG ATTGCGTCAT GCCGACTCGT AACGCGCGCA ACGGCCACCT GTTTACCAGT
GAAGGGGTTA TCAAGATCCG CAATGCGCGT CATCGTGATG ATACTTCACC GCTCGATGCT
AAGTGTGACT GCTACACCTG TAAGAACTAC TCACGGGCGT ATCTGTACCA TTTAGATCGT
TGTAATGAAA TTTTAGGAGC ACGTTTAAAC ACCATTCACA ACTTGCGTTA CTACCAAATG
TTGATGGAAG GTTTGCGTGG CGCTATCGAG ACAGGTACAT TAGACGCCTT TGTTGAGGAG
TTCTATACCA GTCAAGGTCG CGAAGTTCCT AAGTTATCCG ATTAA
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| Protein sequence | MKFELDTTDG RARRGRLVFE RGTVETPAFM PVGTYGTVKG MTPEEVRATG ADILLGNTFH
LWLRPGEEIM RKHGDLHDFM NWQRPILTDS GGFQVFSLGD IRKITEEGVH FRSPINGEKI
FMDAEKSMQI QYSLGSDVVM IFDECTPYPA THDEARKSMQ MSLRWAQRSR DEFDRLENPN
SLFGIIQGSV YEDLRDESLK GLLEIGYDGY AVGGLAVGEP KEDMHRILEH VCPQIPADKP
RYLMGVGKPE DLVEGVRRGV DMFDCVMPTR NARNGHLFTS EGVIKIRNAR HRDDTSPLDA
KCDCYTCKNY SRAYLYHLDR CNEILGARLN TIHNLRYYQM LMEGLRGAIE TGTLDAFVEE
FYTSQGREVP KLSD
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