| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2328 |
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| Symbol | |
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| ID | 4922108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2721211 |
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| End bp | 2722908 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163913 |
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| Product | signal transduction histidine kinase, LytS |
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| Protein accession | YP_001094453 |
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| Protein GI | 127513256 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3275] Putative regulator of cell autolysis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0659282 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.34431 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTTAA TCCTCCTGCT CACCCAACAG ATGTGCCTCT ACCTGGTCAT AGTGTACCTG
CTGAGTAAGA CGCCGCTGTT TAAGCTATTT GCCGAGACGG CAACCCGTCT GCCCCATAAG
ATCTACATCT ATCTTATCTT CTCGGGTTTC TGCATCATGG CCACCTATTT TGGTGAGCAG
ACCAACGATG CCATCGCCAA TACCCGCGCC ATGGGCGCCG TGCTCGGCGG CCTGTTAGGC
GGACCGGTTA CCGGCTTTTT GGTGGGCCTA ACCGGCGGCC TGCACAGATA CAGCATGGGC
GGCTTTACCG ACTTGGCCTG TGCCATCTCC ACCACGTTAG AGGGCCTATC GGCGGGCATA
GTCGGCTTTT ACCTGCGTAA GCAAAATCGC AGCGAGATGG TCTATGCGCC GCTGCTGGTC
GCCCTAGTCA CCTTCTCGGC CGAGATGCTA CAGATGGCGC TGATCCTGGC CATCGCCAAG
CCCTATGGTG ATGCCCTAGC CCTGGTGAAA CAGATAGCTC TGCCCATGTT GACGGTCAAC
TCCATAGGCG CCGCCCTCTT TATGAGCATG GTGCGGGATC AGAAGACCAT GTTCGACAAG
CTCTCCTCTG CCTTCTCCAC CAAGGCACTT AAGATTGCCG AGCGCAGCGT GGGGATCCTC
TCCAAGGGGT TCGATCAGGA GGGCAGCACT AAGGTGGCGC AGATCATCCT AGAGGAGACT
AACGTCGGCG CGGTGGCCAT TACCGATAGG GAGAAGCTGC TGGCGTTTAT CGGCATCGGT
GACGACCACC ATATTCCCGG CACCCCCATC TCCTCAAAGA TCACCCAAGA TGCCATAGAG
CAGAACTGTG TCATGTTCGC CGACGGTGTG GAGACCCCCT ATGCCTGCTC CATCTCGCCC
CAGTGTCGCC TCGGCTCCAG CCTGGTGATC CCACTGAGGT GCGAGTCTGA GGTGATAGGC
ACCATCAAAC TCTATGAGCC CAAGAATAAG CTGTTTCTCA ACATCAACCG CACGCTGGGT
GAAGGGATCG CCAGGCTGAT GAGTAACCAG ATCCTCTACG GCCGCTACGA GCTGCAACAG
AGCCTGCTGA CTCAGGCGGA GCTCAAGCTG CTGCAGGCGC AAGTTAATCC CCATTTCCTG
TTTAACGCGC TCAATACCAT CGCCGCCATC ATAGGCAAGG ATCCCCTGAT GGCGAGGCAA
CTGCTCCAAC ACCTGTCGCA GTTTTTGCGC ATCAACCTCA AGCGCACCAC AGGCCTGGTG
ACCCTCAGCG ATGAGCTGGA ACATATCGAC GCCTACCTCA CCATAGAGAA AGCGAGATTT
ATCGATAAGC TCAGCGTGCA TATCGACATT CCAGCAACGC TGCACCAGTA CCGCCTACCG
GCCTTTACCC TGCAGCCCAT CATAGAGAAT GCGGTAAAGC ATGGTACCTC ACACCTGCTG
GAGCCCGGGG AAATCTGGGT CAGTGGCAGA GCCGAGCAAG ATTTATTAAT ATTGGAAGTA
AAAGATAATG CAGGTCTGTA TCGGGAAGAG CTCAATGCAG ACACCTCAGG ATTAGGTATG
TCCATCGTCC ATAAGCGGAT CCAGAGCCTG TTTGGCCCCC ACTATGGCGT TAAGATCAAC
TGCGAGAAGG ACCGTTTTAC TCAAGTCATT ATTACCCTGC CGCTAAATGA TGTGGCACAG
ACGGAACCCA CAGCGTGA
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| Protein sequence | MPLILLLTQQ MCLYLVIVYL LSKTPLFKLF AETATRLPHK IYIYLIFSGF CIMATYFGEQ
TNDAIANTRA MGAVLGGLLG GPVTGFLVGL TGGLHRYSMG GFTDLACAIS TTLEGLSAGI
VGFYLRKQNR SEMVYAPLLV ALVTFSAEML QMALILAIAK PYGDALALVK QIALPMLTVN
SIGAALFMSM VRDQKTMFDK LSSAFSTKAL KIAERSVGIL SKGFDQEGST KVAQIILEET
NVGAVAITDR EKLLAFIGIG DDHHIPGTPI SSKITQDAIE QNCVMFADGV ETPYACSISP
QCRLGSSLVI PLRCESEVIG TIKLYEPKNK LFLNINRTLG EGIARLMSNQ ILYGRYELQQ
SLLTQAELKL LQAQVNPHFL FNALNTIAAI IGKDPLMARQ LLQHLSQFLR INLKRTTGLV
TLSDELEHID AYLTIEKARF IDKLSVHIDI PATLHQYRLP AFTLQPIIEN AVKHGTSHLL
EPGEIWVSGR AEQDLLILEV KDNAGLYREE LNADTSGLGM SIVHKRIQSL FGPHYGVKIN
CEKDRFTQVI ITLPLNDVAQ TEPTA
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