Gene Shew_2322 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2322 
Symbol 
ID4922102 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2717361 
End bp2718533 
Gene Length1173 bp 
Protein Length390 aa 
Translation table11 
GC content60% 
IMG OID640163907 
ProductNnrS family protein 
Protein accessionYP_001094447 
Protein GI127513250 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3213] Uncharacterized protein involved in response to NO 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.40024e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.965133 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTAACA TAGACGAACC CGCCCACCTC CAACCCAAAC TCGCCCTGCT GCGTTTGGGA 
TTTCGTCCCT TCTTCCTGTT TGGCGCCCTG TTCAGCCTAG TCGCCTTGGC GCTTTGGGGC
AGCTTTCTCA CCGGTCGTCT CGGCTTTACC CCCCATGGGA ATCCGCTGTG GTGGCACGGC
CATGAGATGT TATTCGGCTT CGTGATGGCG ATTGTGGCAG GCTTCCTGTT AACCGCATCG
CAAACCTGGA CAGGTCAGAA GAGCATCAAG GGCTGGCCAC TGGGTGCCCT CTTCCTGCTT
TGGCTGGCGC CGCGCATCTT GCTCGCGAAT AATCAGTGGG GCAGCTTCGA GGTCGTGGCC
ATGCTGGATC TGCTGTTCGC GCCGGCGGCC GCGCTGGTAC TGGCGAGACA GGTGATCGCC
GTCAAACAGT GGCGCAACTT TGCCTTCATC CCCATCCTGC TGTTGCTTAC TGTGGCCAAC
GCCCTGAGTT ACTACGGCGT CAGCAGCCAG AACAGTCTGC TGGTGTCCCA TGCCTTTCAC
GGCGCCACCA TCTTGATGGT GACCATAGTG GCCCTCATCG GCGGTCGGGT GATCCCCTTC
TTCACCGACA GAGCCACACA GTGGCAGCGA CTGGACAACA TCTCCTGGCT GGAAAAGCTC
ACCTTCGTCA GCCTGATGGC ACTCTTTATC GCCATGCTTA TCGGTCAGTC TCTTGCAATA
ATGCTCTGCG CCGCCGTGGC CGGGATCACC CTACTGGTGC GCTGGTCCCG CTGGGGCGTG
CAATCGACCT TTGGCGTGCC ACTGCTCTGG TCGCTACATC TGAGTTATCT CTGCATCCCT
GTGGGTCTAC TGCTGATCGC AGTCGGGGCC AGCGTCTCCG CCGGTCTGCA TGCCATGACG
GTGGGGGGAC TCGGCGGCAT GATCCTGGCG ATGATGGCCA GGGTCTCGTT AGGTCACACG
GGTCGTAACC TCTTGCCACC TAAGGTGATG ACGGGCGCTT TTGCGCTGAT CCTCATCTCG
ACCATCACCC GCGTCTTGGC CAGCCTGTTC CCGGCGCAGT TTATGCTCTG GCTAACCATC
GCACTGGTCG CCTGGATCTT TGCCTTCGGC ACTTTCGTTA TCTGCTATGC CCCTATTTTG
CTCACGCCAA GGGTAGATGG CAGACCGGGC TAG
 
Protein sequence
MLNIDEPAHL QPKLALLRLG FRPFFLFGAL FSLVALALWG SFLTGRLGFT PHGNPLWWHG 
HEMLFGFVMA IVAGFLLTAS QTWTGQKSIK GWPLGALFLL WLAPRILLAN NQWGSFEVVA
MLDLLFAPAA ALVLARQVIA VKQWRNFAFI PILLLLTVAN ALSYYGVSSQ NSLLVSHAFH
GATILMVTIV ALIGGRVIPF FTDRATQWQR LDNISWLEKL TFVSLMALFI AMLIGQSLAI
MLCAAVAGIT LLVRWSRWGV QSTFGVPLLW SLHLSYLCIP VGLLLIAVGA SVSAGLHAMT
VGGLGGMILA MMARVSLGHT GRNLLPPKVM TGAFALILIS TITRVLASLF PAQFMLWLTI
ALVAWIFAFG TFVICYAPIL LTPRVDGRPG