| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2316 |
|---|
| Symbol | |
|---|
| ID | 4922166 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2712101 |
|---|
| End bp | 2712484 |
|---|
| Gene Length | 384 bp |
|---|
| Protein Length | 127 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640163901 |
|---|
| Product | scaffold protein |
|---|
| Protein accession | YP_001094441 |
|---|
| Protein GI | 127513244 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0822] NifU homolog involved in Fe-S cluster formation |
|---|
| TIGRFAM ID | [TIGR01999] FeS cluster assembly scaffold IscU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.624311 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTACA GTGAAAAAGT AATAGATCAT TATGAGAACC CGCGTAACGT AGGTTCATTC
GACAAGAACG ACCCTTCAGT GGTTACCGGT ATGGTAGGTG CGCCTGCCTG TGGTGACGTT
ATGAAGCTTC AGCTGAAGAT CGACGACAAC GGTATCATCG AAGATGCCAA GTTCAAGACT
TACGGCTGTG GTAGCGCTAT CGCGTCAAGC TCTCTGGTCA CCGAGTGGGT GAAGGGCAAG
ACGATTGAAG AAGCGCAAGC GATTAAAAAT ACGGATATTG CTGAAGAGCT TGCCCTACCG
CCTGTTAAAA TCCACTGCTC AATCTTGGCT GAAGACGCCA TCAAGGCAGC GTTAGACGAG
TACAAGGCTA AGCACGAAAA GTAA
|
|---|
| Protein sequence | MAYSEKVIDH YENPRNVGSF DKNDPSVVTG MVGAPACGDV MKLQLKIDDN GIIEDAKFKT
YGCGSAIASS SLVTEWVKGK TIEEAQAIKN TDIAEELALP PVKIHCSILA EDAIKAALDE
YKAKHEK
|
|---|
| |