| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2283 |
|---|
| Symbol | |
|---|
| ID | 4922305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2667624 |
|---|
| End bp | 2668781 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640163868 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001094408 |
|---|
| Protein GI | 127513211 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAGA AGTTATTGGC TCTGTTGATC CCATCTGTAT TGATGGCCAG CTCGGCGCAG
GCTATCGAGT TATACAAGGA TCAAACCAAT GCTCTGAATA TGATGGGCTG GCTTGGTTTC
GCCGCGGTTA ACGATGGTGA TGACACCGCC GTGGTTGATA ATTTTTCGCG TGTCGGCTTC
CGATTCGACC GCCAGGAGAA GAACGGCTGG CGCAGCTTCG CTCACACCGA GTGGGGCATC
AACATGGTCA CCAGCGATGA CTCGCTCAAA TATGTGGGCG GCCAGCTGGG CGCGCAGAAG
ACATCAGACT TCCTGTTTAA CCGTTTAGGT TATGTCGGCC TGTCACACGC CAAGTGGGGT
AGCCTGAGTT TTGGTAAGCA ATGGGGCGCC TACTATGACG TGGCGTACAC CACAGACGTG
CTCAACGTCT ATACCGGCTA CTCGGTCGGC GCCTATACCT TCGGTGACGG TGGCCTAACG
GGCGCGGGCC GTGCCGACTC AGCCTTCATC TATCGTAACA GCTTCGGCGA TCTGGATATC
GCGCTGCAAT ACGCCGCCAA GCAAAATGGT GACGTCGCCC TGTTTGATAA GAATGGTCAG
GCGGTGGACG ATGGCTCTCA CCTGAGCTTC GACACCAGCT ATGGTGCCAA CCTGACCTAT
CATGTGACCG ATAAGTTTAA GGTACTTGCC GGCTTTAACC GCGGCGATTT CGAGGGTGAG
CTGGCCGGAG TTAGCGTCGA TGATACCAAC GAGATCATAG GTATCGGCGC CCAGTATGGC
TCCTTCTACC AGTATGCGCC TGGCCGCTAC GCCAAGGGCC TCTATGTCGG TTTCAACGCC
CATCAGAGCA AGCAAAACGA ATTGGTGGCC GGTCAGCTTT ATGACTCTAC CGGCGCCGAG
TTCCTGGTGG CCTACCACTA TGACAATGGT TTCGTGCCTA GCTTCCTGAT CTCTTATCAG
GATCTGGATA CCGACGAGAC TACGGCCATC AAGGGTAACT GGACACGTCA GTTTGCCGTG
CTAGGCCTGC ACTATCGCTA CAGCCGAGAT ACCGTGATGT TTGCCGAAGC CAAGTTCGAC
TTCAGCGACA TGGATGACAA AGGTTTCGAG GCGGCACAAG ACAACAGCTA CGCCGTCGGT
ATCCGCTACT TCTTCTAG
|
|---|
| Protein sequence | MNKKLLALLI PSVLMASSAQ AIELYKDQTN ALNMMGWLGF AAVNDGDDTA VVDNFSRVGF
RFDRQEKNGW RSFAHTEWGI NMVTSDDSLK YVGGQLGAQK TSDFLFNRLG YVGLSHAKWG
SLSFGKQWGA YYDVAYTTDV LNVYTGYSVG AYTFGDGGLT GAGRADSAFI YRNSFGDLDI
ALQYAAKQNG DVALFDKNGQ AVDDGSHLSF DTSYGANLTY HVTDKFKVLA GFNRGDFEGE
LAGVSVDDTN EIIGIGAQYG SFYQYAPGRY AKGLYVGFNA HQSKQNELVA GQLYDSTGAE
FLVAYHYDNG FVPSFLISYQ DLDTDETTAI KGNWTRQFAV LGLHYRYSRD TVMFAEAKFD
FSDMDDKGFE AAQDNSYAVG IRYFF
|
|---|
| |