| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2270 |
|---|
| Symbol | |
|---|
| ID | 4922625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2649838 |
|---|
| End bp | 2651127 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640163855 |
|---|
| Product | alpha/beta hydrolase fold |
|---|
| Protein accession | YP_001094395 |
|---|
| Protein GI | 127513198 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.201892 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGATC TACAACGCCT CGCCGGCATC CATTGCCGCA AACACTTTTT TTCGCTGCCA
TTGGATCACC AAGCCCCAGA TGGCGAGTGC ATCACTGTCT TCGCCCGGGA GTTAGTGGCG
CCTGAACACA CAGATAGCAA TCTGCCTTAT CTGGTCTACT TCCAGGGTGG TCCGGGCTTT
GGCGCCATCA GACCCGCGGC CAACGGCGGC TGGATAAAGC GCGCCCTGCA GGAATATCGC
GTCTTGCTGC TGGATCAGCG CGGCACAGGC CTCTCTAGCC CGATCAACTA TGCCTCACTG
GCCCATCTGG ACTCACAAGC CCAGGCCGAC TACCTCAGCC ATTTTCGCGC CGACAGCATC
ATCCAGGATG CCGAGCTTAT CAGGGCACAG CTGATTGGCG ATGAGAAGTG GAGCATACTC
GGTCAAAGCT TCGGCGGCTT CTGCGTGCTG AAATACCTAA ACGATGCGCC CCATGGCCTG
CATGAAGCCT ATATCACGGG CGGCATCCCT TCGCTGACCC GCAGCGCCGA TGAGGTCTAT
CAGGCCACCT ACAAGCGAGC GCTGGCCAAG AACCAGGACT TCTTCGCCCG TTTCCCCGAC
GCGCAAGCTC TGGTTAAACG CCTGGCCGCC TACCTGCAAC AGAACGAGGT GCGCATCGCC
ACCGGCGAGC GCCTCACTGT GGAGATGCTG CAGCTTCTGG GGATCAATAT CGGCATGGAG
CAAGGCGGCG AGCCCGTCTA TTACCTGCTG GAACAGGCGT TGATAGAGAC GGCCAAGGGC
ACTCAAGTCA ACCCACTGTT TTTGGCTCAC TTCTGCCAGC TATTGGACTT TAACACCAAC
CCCATCTTCG CTCTGCTACA CGAGAGCATC TACTGTCAGC AAGAGGCGTC GAGCTGGGCG
GCCCATAGGG TAAGACAGAC CTATGAAAAG TTTAACTACC AGGCGGACAA GCCCTTCCTG
TTTACCGGCG AGATGGTCTA CCCCTGGTTC TTCGATCAGT TCACCAACCT CAAGCCGCTG
AAACACGCGG CGCACCTGCT GGCAGACAAG GCCGACTGGC CCATGCTGTA CGATCCCGCC
AAACTGGCCG ACAATCAGGT GCCGGTAGCG GCGGCCATCT ACAGCGAAGA TATGTTCGTG
GAGATGAATT ACAGCCTGGA GACGGCGGCT CAGGTGGGTA ACCTGAAGTA CTGGCTCACC
TCTGAATATG AGCATAATGG CATCCGTATG GATGGGGAGC ATATTTTGGA TAGGTTGATT
GGGATTAATC GAGGGGAGAG ACTCAGGTAA
|
|---|
| Protein sequence | MSDLQRLAGI HCRKHFFSLP LDHQAPDGEC ITVFARELVA PEHTDSNLPY LVYFQGGPGF
GAIRPAANGG WIKRALQEYR VLLLDQRGTG LSSPINYASL AHLDSQAQAD YLSHFRADSI
IQDAELIRAQ LIGDEKWSIL GQSFGGFCVL KYLNDAPHGL HEAYITGGIP SLTRSADEVY
QATYKRALAK NQDFFARFPD AQALVKRLAA YLQQNEVRIA TGERLTVEML QLLGINIGME
QGGEPVYYLL EQALIETAKG TQVNPLFLAH FCQLLDFNTN PIFALLHESI YCQQEASSWA
AHRVRQTYEK FNYQADKPFL FTGEMVYPWF FDQFTNLKPL KHAAHLLADK ADWPMLYDPA
KLADNQVPVA AAIYSEDMFV EMNYSLETAA QVGNLKYWLT SEYEHNGIRM DGEHILDRLI
GINRGERLR
|
|---|
| |