Gene Shew_2240 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2240 
Symbol 
ID4922876 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2617717 
End bp2618553 
Gene Length837 bp 
Protein Length278 aa 
Translation table11 
GC content52% 
IMG OID640163825 
Producthypothetical protein 
Protein accessionYP_001094365 
Protein GI127513168 
COG category[S] Function unknown 
COG ID[COG3220] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000381376 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000876549 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATGACAC AAGCTAAGGT GGGGCTCGGC CTGCGCCGCG AGATGCTAGA TGAGTTTTGC 
CAGTCTGTCC CCGGTGCCAT CGATTTTTTC GAGGTGGCGC CCGAGAACTG GATGACACTT
GGTGGTAAGT TTGGCCGTCA ATTTAGGCAG TTAACCGAGA AGCACAAGTT TTTCTGCCAC
GGACTGTCGC TCTCTATCGG TGGCCCAGAG CCCCTAGATA CGCGTTTCGT TAAGCAGATT
AAAACCTTTC TAGACCATCA CGACATAGAG ATCTATTCGG AGCACTTAAG TTACTGTTCG
GGCAAGGGCC ATCTGTATGA CTTGATGCCA ATCCCCTTTA CTGATGAGGC GGTGCGCCAC
GTGGCAAGGC GTATTGAGCA GGTACAGGAT ATCTTAGAGC GTCCCTTTAT TCTGGAAAAC
GTATCCTTTT ACGCCTCGCC CGCGAGCGAG ATGAGCGAGT GTGAGTTTGT CAGCGCCGTG
CTTGAAGAGG CAGATTGTCG CCTGCTGCTG GATGTGAACA ACATCTATGT TAACTCGATC
AATCATCAAT ATGACGCCGA AGCCTTCTTA AGGGCCATGC CCAGCGAGCG TATCGCCTAC
CTGCATATTG CCGGTCATTA CGATGAGGCG GAAGATCTTA AGGTCGATAC CCATGGCAGC
GAGGTGATCG ACCCCGTCTG GCGTTTGTTA GCGATCTGTT ATCAGACCCA TGGTGTGTTT
CCAACCTTGC TCGAGCGTGA CTTTAATATT CCTGCCACCC ATGAGTTGCT CAAAGAGATC
AACAAGATAC ATGGCTATCA GACCAAGGCA TTACAGCCCA GCCATCGGAG CGCCTAG
 
Protein sequence
MMTQAKVGLG LRREMLDEFC QSVPGAIDFF EVAPENWMTL GGKFGRQFRQ LTEKHKFFCH 
GLSLSIGGPE PLDTRFVKQI KTFLDHHDIE IYSEHLSYCS GKGHLYDLMP IPFTDEAVRH
VARRIEQVQD ILERPFILEN VSFYASPASE MSECEFVSAV LEEADCRLLL DVNNIYVNSI
NHQYDAEAFL RAMPSERIAY LHIAGHYDEA EDLKVDTHGS EVIDPVWRLL AICYQTHGVF
PTLLERDFNI PATHELLKEI NKIHGYQTKA LQPSHRSA