| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2235 |
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| Symbol | |
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| ID | 4922871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2611845 |
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| End bp | 2615186 |
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| Gene Length | 3342 bp |
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| Protein Length | 1113 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163820 |
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| Product | DNA polymerase III, subunits gamma and tau |
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| Protein accession | YP_001094360 |
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| Protein GI | 127513163 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2812] DNA polymerase III, gamma/tau subunits |
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| TIGRFAM ID | [TIGR00678] DNA polymerase III, delta' subunit
[TIGR02397] DNA polymerase III, subunit gamma and tau |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00400296 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000493259 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCATATC AGGTGTTAGC CAGAAAATGG CGCCCTGCAA CATTTGAGCA AGTTGTCGGT
CAGTCACATG TGCTGCATGC CCTAACCAAT GCCTTATCGC AAAACCGTCT ACATCATGCC
TATCTGTTTA CCGGTACCCG AGGGGTAGGT AAGACGAGTC TGGCTAGGCT ATTTGCCAAG
GGACTGAACT GTGAGCAAGG GGTAACGGCC ACGCCCTGTG GCCAGTGTGC CAGCTGTGTC
GAGATCGCCC AGGGGCGATT TGTCGATCTT ATCGAGGTGG ATGCCGCGTC GCGCACCAAG
GTTGACGATA CCCGCGAGTT GCTGGACAAC GTTCAGTATC GCCCCACGCG CGGCCGCTTC
AAGGTGTATC TTATCGATGA GGTGCACATG CTCTCGCGCA GCAGCTTCAA TGCGCTGTTG
AAGACGCTGG AAGAGCCCCC AGAGCATGTT AAGTTCTTGC TGGCGACCAC AGATCCCCAG
CGCCTGCCCG TCACCGTACT CTCCCGCTGT CTGCAATTTA ACCTTAAGAG TCTGACACTT
GACGAGATCT GCGTGCAGCT TGGCCACATC CTGGCTCAGG AGCAGGTGGG GTATGATGAT
GGCGCGGTAA AACTACTCGC CAAGGCGGCC AACGGCAGTA TGCGTGACGC CTTGAGTCTA
ACGGATCAGG CTATAGCCTT CGGCGCAGGT CAAGTCAGGC TCACTCAGGT GCAGACCATG
CTGGGCACCA TAGATGAGCA TCATGTGATT GTCTTGCTCA AAGCCCTGTG CGATGGCGAC
GTGGATCTGC TCATGAAGGT GACTGGGGAT GTTTTATCCT TCGGCGCCGA TCCCCATGAG
GTGCTGCGCA GCCTGCTGGA ATTGCTGCAT CAGATCACCT TGACCCAGTT TGCACCCAGC
GCCGCTCAGC TGTCGCAATA TGCCGAGCAG ATCAAGGCCT TCGCCAAACA GCTAAGGCCC
GAGCAGGTAC AGCTCTATTA TCAACTATTG CTAAACGGTC GGCAGGATCT GCCCCATGCG
CCCGACCCTA AGTCAGGCCT GGAGATGGCG CTGCTGCGCG CCATCGCTTT CGTGCCCGAG
GCGCCTGTGC AACGCTGGAT GGGCGAGGCC GGCAGCGAGA TCCTCTTGCC TGACACTCCC
TTACCAGAAC TGGGCAAGGG TGAAGATGTT GCGCCAACCT CTGCTAGGCC AGATGGAACA
GTTAAGCCGG TGAAACCTGC TGAGTCTGTG CTAAACAGTC AGGCGGAAGC CGAGGTTGAA
GACAAGGCCG AGGTTGAAGA AAAAGCTAAG GTCGAGGCCA GCAATGAAGC AAGTGTGGCA
ATGTTGTCCG ATGCGCAAGC GTCCACTGCT GAGCAGACGA ACAAGTTAAG CGATACTGAC
GGCCCATTTG AAGCGAATTT AGTTGCAGTG GATTTAGTTG AAGCTGATTC GACAGAAAAG
GATGCGCTTG AAGAGGATGA GGGTGCACTC GATCTGTTTG CCGAGCAGCA GCTGATCTTG
AGCCAGGCCC AAAGCAAAGG GCACAGCCCT GAGCTTAGCG CTGAGCTTAG CACTAACCAT
AGTCCTGAGC CTAGCCCTGA GCCTGAATCT AGCCCTGAGC CGAGCCCGCA AGAAACAAGC
TCGGCAAATA AAAGTCCCGT AAGCGAAGCA TCTGCCGAGT CTAAAGTGGA TGCGTCGACG
AGTGCTGCGA CAGCACAGGG CGGTGAAGCG GCTCTGTCAA CCGAGCCAAA AATGCCGGCA
GAAAGCGTCG AGCAAACAGC TTCAATAGCC GAGCAAGCCA GTTCGTCAGC AGACGAGAGT
GGCAGTTTTT ACGATGACCT CTATTTCAGT TCAGATGACG ATGAGTCTGG CGACCCAAGC
GACTATGAAG CCTACCTAGC CTATCAGCAG GGACAGGATA GTCAGGCATC TGGCGATATC
TCTTCCTCTG CGGCGACAAG GCCTGTTGAC AACAGTGCCC AGGTTAGTAG CGCTCCGGTA
AATGAAAATG CACCACTTGG CGGTTTGACT CCCGATACTG GATTGGCAAG TGAAGACACC
ACGCCCAACC TGTTAGAAGA TGATCTGCTC GACGCCGTAT TGAATGCGCG TCAGAGCCTG
CTTAGCGATC TTGAGGAAGA TGCGGCTAAG GAGGACGCGG CTAAGGAGAG CGCATCAAAA
AAGCCCCTAG TCGGCGCTAA GAAGCCTGGG GCTAACCAGG CTCAAGCGAG TAGCGAACAG
CAGGCGGGCG AAGAGAATAA GTCTGGCGCA GAGCCTTATG TGCCGCCCAA ACGGCCAGAG
CAAGCAGCCC TGAGCGTAGA AACAGCCCCG AGCGGAGAAG CAACTTCTCA GAGCTTTGGT
GAGACAGCCC AGAACGCTCA AGATAATGCC TTGATCGTCG AAGCTGTCTC GAACACGGCT
GTGACGAACG AGGCTGGGAA GACTGAGCAT GGGACGAAAG CGCCTGAGAC GCAGCACAAT
TATTCTGCGC AGCAGCCTAA TGCGTACCTA AATGATGAAG ACAGGCCGCC TTGGGTGTCG
CCAGAGCCGA GCCTGCAGGC AGTTACCGCA CCAAGTGATG AAGTGCCTAA TCTTGCTGGG
CAAGTCGATA CTCAATCTGA GTCACACGCC CGCGCCGATG CAGCTGCTCA GATAGAACAA
GGCTTGGATG AACTCAGCTT GGAGGACCAA AGCTTGGATG ACCAAAGCTT GGATGACCAA
AGCTTGGATG ACCAAAGCTC GGAGGACCTC AACTCGGATG ACCAAGGCTC AAATGAAAGC
GGTGCTTTCG GCAATCATCC CGTCCAGAGT CCTGCAGCGC AGGAAGTGTC GGCACCTTCA
GCCGTCACTG AGCCCGTCAG CCAGACGACA CAAGTGGCCT TTGTGGCCGA TGAGATCACA
GGGCACGATA CGGATCTTAA ATGGTATCGC TTGATGTCGG CGCTGGAGAT CGGCGGCCGG
GTAAGACAGC TGGCGGTCAA CGCCGTATGT AAGGCCTTTA GTGAGCCTCT GCCTTTGGTG
CTTAAGCCCA ATCAGAAGCA CCTGGCGGCG CCAGGCGCCA TCAGTCAGCT CGAAGATGCC
TTGTCTAAGG CGTTAGGCGG CAGCTGCCAG GTGGCGTTTA GCGTCGGGGT CGAGCCTGAG
CGTGAGACAC CGCTAGAGAT CCGTCAGCGA TTCCATCGCG AACTGCTCGA GCAGGCGCAT
CAGGGGTTAT TGCAAGATGA AAACATTCAA TGGCTGACAC AGGTGATGCA GGCAGAGATG
GAGCCAGACA GCTTAAGTTA TCTGCCGGAG CTGCTGGGTA AGCGGGGCCA GACGATAGCA
CTTATCGATA AGTCGAACTT TGTGGCGACA GAGGAGTCTT AA
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| Protein sequence | MSYQVLARKW RPATFEQVVG QSHVLHALTN ALSQNRLHHA YLFTGTRGVG KTSLARLFAK
GLNCEQGVTA TPCGQCASCV EIAQGRFVDL IEVDAASRTK VDDTRELLDN VQYRPTRGRF
KVYLIDEVHM LSRSSFNALL KTLEEPPEHV KFLLATTDPQ RLPVTVLSRC LQFNLKSLTL
DEICVQLGHI LAQEQVGYDD GAVKLLAKAA NGSMRDALSL TDQAIAFGAG QVRLTQVQTM
LGTIDEHHVI VLLKALCDGD VDLLMKVTGD VLSFGADPHE VLRSLLELLH QITLTQFAPS
AAQLSQYAEQ IKAFAKQLRP EQVQLYYQLL LNGRQDLPHA PDPKSGLEMA LLRAIAFVPE
APVQRWMGEA GSEILLPDTP LPELGKGEDV APTSARPDGT VKPVKPAESV LNSQAEAEVE
DKAEVEEKAK VEASNEASVA MLSDAQASTA EQTNKLSDTD GPFEANLVAV DLVEADSTEK
DALEEDEGAL DLFAEQQLIL SQAQSKGHSP ELSAELSTNH SPEPSPEPES SPEPSPQETS
SANKSPVSEA SAESKVDAST SAATAQGGEA ALSTEPKMPA ESVEQTASIA EQASSSADES
GSFYDDLYFS SDDDESGDPS DYEAYLAYQQ GQDSQASGDI SSSAATRPVD NSAQVSSAPV
NENAPLGGLT PDTGLASEDT TPNLLEDDLL DAVLNARQSL LSDLEEDAAK EDAAKESASK
KPLVGAKKPG ANQAQASSEQ QAGEENKSGA EPYVPPKRPE QAALSVETAP SGEATSQSFG
ETAQNAQDNA LIVEAVSNTA VTNEAGKTEH GTKAPETQHN YSAQQPNAYL NDEDRPPWVS
PEPSLQAVTA PSDEVPNLAG QVDTQSESHA RADAAAQIEQ GLDELSLEDQ SLDDQSLDDQ
SLDDQSSEDL NSDDQGSNES GAFGNHPVQS PAAQEVSAPS AVTEPVSQTT QVAFVADEIT
GHDTDLKWYR LMSALEIGGR VRQLAVNAVC KAFSEPLPLV LKPNQKHLAA PGAISQLEDA
LSKALGGSCQ VAFSVGVEPE RETPLEIRQR FHRELLEQAH QGLLQDENIQ WLTQVMQAEM
EPDSLSYLPE LLGKRGQTIA LIDKSNFVAT EES
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