Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2233 |
Symbol | recR |
ID | 4923229 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2610691 |
End bp | 2611290 |
Gene Length | 600 bp |
Protein Length | 199 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640163818 |
Product | recombination protein RecR |
Protein accession | YP_001094358 |
Protein GI | 127513161 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0353] Recombinational DNA repair protein (RecF pathway) |
TIGRFAM ID | [TIGR00615] recombination protein RecR |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000324315 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000184375 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAATTTA GTCCCCTGGT CGACGAGTTG ATCCAGTCGC TACGCTGCCT GCCCGGGGTT GGCCCCAAAT CGGCGCAGCG CATGGCGTTT CAACTGCTAG AGCGCGATCG CAAGGCGGGT CATAAGCTGG CCCAGGCGCT GTCGAGCGCC ATGAGTGATG TGGGGCACTG CAGCAGCTGT CGTACCTTCA CCGAAGAGAG CCTGTGTCCT ATCTGCGCCA GTAGTCGTCG TGGTAACTCA GATTTGATCT GTGTGGTCGA GACGCCCGCC GATGTATTGG CGATCGAAGC CGGTGGTCAT TTCTCGGGGC GTTATTTTGT GCTCTTAGGG CATCTGTCAC CGCTCGATGG TGTGGGGCCG GACGAGCTGG GCTTGAGTCT GCTCGAGACT CACCTGGCCA GTGGTGAGGT AAGCGAACTT ATCCTGGCCA CCAACCCGAC GGTAGAAGGG GACGCGACAG CGCACTTTAT CGCCGATATG GCCAAGCAGC ATGAGGTCAA TGTGAGCCGA ATCGCTCATG GTGTGCCCGT GGGCGGCGAG CTGGAGTATG TCGACAGCAC CACGCTGGCG CTCTCCTTTA ATGGACGCAT TCCGTTATAA
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Protein sequence | MKFSPLVDEL IQSLRCLPGV GPKSAQRMAF QLLERDRKAG HKLAQALSSA MSDVGHCSSC RTFTEESLCP ICASSRRGNS DLICVVETPA DVLAIEAGGH FSGRYFVLLG HLSPLDGVGP DELGLSLLET HLASGEVSEL ILATNPTVEG DATAHFIADM AKQHEVNVSR IAHGVPVGGE LEYVDSTTLA LSFNGRIPL
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