Gene Shew_2233 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2233 
SymbolrecR 
ID4923229 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2610691 
End bp2611290 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content59% 
IMG OID640163818 
Productrecombination protein RecR 
Protein accessionYP_001094358 
Protein GI127513161 
COG category[L] Replication, recombination and repair 
COG ID[COG0353] Recombinational DNA repair protein (RecF pathway) 
TIGRFAM ID[TIGR00615] recombination protein RecR 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000324315 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000184375 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAATTTA GTCCCCTGGT CGACGAGTTG ATCCAGTCGC TACGCTGCCT GCCCGGGGTT 
GGCCCCAAAT CGGCGCAGCG CATGGCGTTT CAACTGCTAG AGCGCGATCG CAAGGCGGGT
CATAAGCTGG CCCAGGCGCT GTCGAGCGCC ATGAGTGATG TGGGGCACTG CAGCAGCTGT
CGTACCTTCA CCGAAGAGAG CCTGTGTCCT ATCTGCGCCA GTAGTCGTCG TGGTAACTCA
GATTTGATCT GTGTGGTCGA GACGCCCGCC GATGTATTGG CGATCGAAGC CGGTGGTCAT
TTCTCGGGGC GTTATTTTGT GCTCTTAGGG CATCTGTCAC CGCTCGATGG TGTGGGGCCG
GACGAGCTGG GCTTGAGTCT GCTCGAGACT CACCTGGCCA GTGGTGAGGT AAGCGAACTT
ATCCTGGCCA CCAACCCGAC GGTAGAAGGG GACGCGACAG CGCACTTTAT CGCCGATATG
GCCAAGCAGC ATGAGGTCAA TGTGAGCCGA ATCGCTCATG GTGTGCCCGT GGGCGGCGAG
CTGGAGTATG TCGACAGCAC CACGCTGGCG CTCTCCTTTA ATGGACGCAT TCCGTTATAA
 
Protein sequence
MKFSPLVDEL IQSLRCLPGV GPKSAQRMAF QLLERDRKAG HKLAQALSSA MSDVGHCSSC 
RTFTEESLCP ICASSRRGNS DLICVVETPA DVLAIEAGGH FSGRYFVLLG HLSPLDGVGP
DELGLSLLET HLASGEVSEL ILATNPTVEG DATAHFIADM AKQHEVNVSR IAHGVPVGGE
LEYVDSTTLA LSFNGRIPL