| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2215 |
|---|
| Symbol | pheT |
|---|
| ID | 4923036 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2583594 |
|---|
| End bp | 2585981 |
|---|
| Gene Length | 2388 bp |
|---|
| Protein Length | 795 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640163800 |
|---|
| Product | phenylalanyl-tRNA synthetase subunit beta |
|---|
| Protein accession | YP_001094340 |
|---|
| Protein GI | 127513143 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0072] Phenylalanyl-tRNA synthetase beta subunit |
|---|
| TIGRFAM ID | [TIGR00472] phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.188862 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCA GTGAGTCTTG GCTTCGTGAG TGGGTCAATC CAAGTATTAG CCGTGACGAT
TTGTCACATC AGATCACCAT GGCGGGTCTG GAAGTCGACG GTGTCGACCC GGTAGCCGGT
GATTTTTCAG GCGTTATCGT GGGTGAGGTG GTCGAATGCG GCCAGCACCC TGACGCCGAC
AAGCTACGTG TCACTAAGAT TAATGTCGGT CAGGATGAGT TGATCGATAT CGTCTGCGGC
GCACCAAACT GCCGTCTGGG CCTGAAAGTG GCCGTGGCTA TGGTGGGCGC GGTATTGCCG
GGCGACTTTA AGATCAAGAA GGCCAAGCTA CGTGGTCAGC CATCATTTGG CATGCTCTGC
TCCTATGGCG AGCTGGGTAT CGACATCGAG AGCGACGGCA TTATCGAGCT GCCGCTCGAT
GCGCCTATCG GTCAAGACGT ACGTGAGTAC CTGGACCTTA ATGACGTGGT GATCGATGTC
GATCTGACCG CTAACCGCGC CGACTGTCTT GGCATGGTGG GTCTGGCCCG CGAAGTGGGT
GTACTTAACC GTCAAGCGGT TGTTGCCCCG ACATGGGAAG CGGTCACCCC TAGCATCGAA
GATGCTATCG AGATCGACAA CCAGGCTCCT AGCGCCTGTC CACGCTACCT GGGTCGTGTG
GTGAAAAACG TTAACGTTAA GGCGCAGTCG CCACTCTGGA TGCAGGAAAA ACTACGTCGC
AGCGGCATTC GCTCTATCGA TCCTATCGTC GACATCACCA ACTATGTGTT GATCGAGTTC
GGCCAGCCGA TGCACGCCTT CGACTTGGCG AAGATCGACG GCAAGATCCA GATCCGTCTG
GGTGATGGTG AGGAGAAGCT GACTCTTCTC GATGGCAACG AAATTACCGT ACCAAACGAT
ACCCTGGTTA TCGCCGATAA CAGCCAACCT CTGGCCTTGG CTGGTGTGTT TGGTGGCGAG
TACTCGGGTG TGACCGGTGA GACCCAAGAT ATCCTGCTGG AGTGCGCCTT CTTTGCGCCG
CTGGCGATCA TGGGTAAATC ACGTCGTCTT GGCCTGCACA CTGACTCGTC ACATCGCTTC
GAGCGTGGCG TCGACCCTGA GCTACAACAT AAGGTGATCG ACCGTGCTAC GCGCCTGGTG
CTAGAGATCT GTGGCGGCGA AGCCGGCCCT GTGGTTGAGT CTAAGGCCGA CGAGCATCTG
CCTCAGCCTG CCAACATACT GCTGCGTCGC AGCAAGCTAG ATCGCGTGCT CGGCCATCAT
ATTGCAGATG CCGATGTCAC CGAGATCCTT GAGCGTCTTG GTTTTGGCGT ATCACGTGTG
GATGACAACT GGCAGGTTGT TACTGCGACT TACCGTTTCG ATATGGCGAT CGAAGAAGAT
CTTATCGAAG AGGTTGCCCG CATCTATGGC TACAACAACA TTCCGAATGT TGCGCCAGTA
GCGGCCCTAA GCATGCCTCT ACACAATGAG TCAGATATCG ACCTTAAGCG CGTACGCGCC
ATGATGGTGG CCCGTGGCTT CCAGGAAGCC GTGACCTACA GCTTCGTCGA TCCTAAGCTG
CAGCAACTGG TGCATCCGGG CAGCGATGCT ATGGTGCTGC CAAATCCTAT CTCGGTTGAG
ATGTCGGCCA TGCGTTTGTC TATGTTCACC GGTCTGTTGA CTGCCGTGGG CTACAACCAG
AGCCGCCAGC AAAACCGTGT TCGCCTGTTT GAAACCGGTC TGCGTTTCGT GCCAGATGCC
AACGCCGAAT CGGGTGTGCG TCAGCAGGCT ATGCTAGGTG CCGTCATTGC CGGTAACCAA
AATGACGAAC ATTGGTCGAT GGAATCAAAA ACTGTAGACT TTTTCGACCT TAAGGGCGAT
CTGGAAGCCA TTATCGGCTT GACAGTTTCA GAGGATGAAT TTACTTTTAA AAAAGCATCT
CATCCGGCGC TTCATCCGGG GCAATGTGCT GAAATCTTAA GAAATGATCG TGTGATTGGT
GTCATTGGTG CCGTCCATCC GAGCCTGGAA AAGCCCTTCG GCTTAAATGG TAAAACCATC
GTATTCGAGC TCGAATTAGA CGCCTTATTG CACGCAAGTT TGCCGCAAGC CCAGACTGTG
TCTAAGTTTC CAGCAAACCG ACGTGACATT GCCATCCTGG TTGATGAAGA TGTCTCGGCA
GGAAATGTTG TAAATTTGAT AAGAAAAGTT GGCGAAAATC AGTTGGTTGG CTTAAACTTG
TTCGATGTAT ACCAAGGTAA AGGTGTTGAA CCAGGTAAAA AGAGTCTGGC GATTGCACTT
ACACTACAAG ACAACGCTCG TACACTTGAA GAGAAAGAAA TTGCTGAAAT GGTAGAAAAA
GTAGTTTCTG AACTCAAGAC CGAGTTCAAC GCACTGTTGA GGGATTAA
|
|---|
| Protein sequence | MKFSESWLRE WVNPSISRDD LSHQITMAGL EVDGVDPVAG DFSGVIVGEV VECGQHPDAD
KLRVTKINVG QDELIDIVCG APNCRLGLKV AVAMVGAVLP GDFKIKKAKL RGQPSFGMLC
SYGELGIDIE SDGIIELPLD APIGQDVREY LDLNDVVIDV DLTANRADCL GMVGLAREVG
VLNRQAVVAP TWEAVTPSIE DAIEIDNQAP SACPRYLGRV VKNVNVKAQS PLWMQEKLRR
SGIRSIDPIV DITNYVLIEF GQPMHAFDLA KIDGKIQIRL GDGEEKLTLL DGNEITVPND
TLVIADNSQP LALAGVFGGE YSGVTGETQD ILLECAFFAP LAIMGKSRRL GLHTDSSHRF
ERGVDPELQH KVIDRATRLV LEICGGEAGP VVESKADEHL PQPANILLRR SKLDRVLGHH
IADADVTEIL ERLGFGVSRV DDNWQVVTAT YRFDMAIEED LIEEVARIYG YNNIPNVAPV
AALSMPLHNE SDIDLKRVRA MMVARGFQEA VTYSFVDPKL QQLVHPGSDA MVLPNPISVE
MSAMRLSMFT GLLTAVGYNQ SRQQNRVRLF ETGLRFVPDA NAESGVRQQA MLGAVIAGNQ
NDEHWSMESK TVDFFDLKGD LEAIIGLTVS EDEFTFKKAS HPALHPGQCA EILRNDRVIG
VIGAVHPSLE KPFGLNGKTI VFELELDALL HASLPQAQTV SKFPANRRDI AILVDEDVSA
GNVVNLIRKV GENQLVGLNL FDVYQGKGVE PGKKSLAIAL TLQDNARTLE EKEIAEMVEK
VVSELKTEFN ALLRD
|
|---|
| |