| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2174 |
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| Symbol | |
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| ID | 4923349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2533507 |
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| End bp | 2534268 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163759 |
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| Product | fatty acid metabolism regulator |
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| Protein accession | YP_001094299 |
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| Protein GI | 127513102 |
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| COG category | [K] Transcription |
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| COG ID | [COG2186] Transcriptional regulators |
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| TIGRFAM ID | [TIGR02812] fatty acid metabolism transcriptional regulator FadR |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000030216 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0239474 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACTG TCCCCCAAGT ACCTGTAGCG CCTAAAGACA AAGATATTAT TGAAGCGAAA
GGTCCTGCGA GCTTTGCCGA AAAGTATATT GTTCGTTCGA TTTGGGAGGG AAAGTTTCCA
CCCGGTTCCA TTCTTCCTGC CGAGCGAGAA CTGTCTGAAC TGATTGGCGT GACACGTACG
ACGCTGCGTG AAGTGCTGCA GCGCCTCGCC CGTGACGGCT GGTTGACCAT TCAACACGGT
AAGCCGACAC GAGTTAACGA TATCTGGGAA ACCTCGGGTC TGAACGTGCT GGAAACCATC
GCCGATCTTA ACCCTGCCGG TGAACCTGTG CTGCTGGAGC AGCTTTTATC TGCCCGCACC
AACATCAGTG CCATCTATTT TAAGGGCGCC GTGCGTTACA ACCCAGACAA GGTGCTTGAG
GCGTTAGCGC CACTGGCCAC CCTGAAAGAT GATGCCAAGG CTTTTATCGA GTTCGATTAC
CAACTGCATC ACACCCTGGC GTACCATTCC GGTAACCCTC TGTATGTGTT GATCCTCAAC
GGTTTCAAGG GCCTCTATAG CCGTGTGGGT GAAGAGTACT TTGCCATTGA GAAGGCCCGT
GAGCTGGCGC TGGACTTCTA TCAGGCGCTC GAAGCCCTGG CCAAAGATCA CAACCACAAC
GACGTGCCTG TATTGATGCG TAGCTACGGC ATCAACAGCG GCAAGGTGTG GCAGCGTTAC
AAGGCGAATC TGATGCAGTC GGCCGAGGCG AGCAAGGCTT AA
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| Protein sequence | MTTVPQVPVA PKDKDIIEAK GPASFAEKYI VRSIWEGKFP PGSILPAERE LSELIGVTRT
TLREVLQRLA RDGWLTIQHG KPTRVNDIWE TSGLNVLETI ADLNPAGEPV LLEQLLSART
NISAIYFKGA VRYNPDKVLE ALAPLATLKD DAKAFIEFDY QLHHTLAYHS GNPLYVLILN
GFKGLYSRVG EEYFAIEKAR ELALDFYQAL EALAKDHNHN DVPVLMRSYG INSGKVWQRY
KANLMQSAEA SKA
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