| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2170 |
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| Symbol | |
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| ID | 4923345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2523232 |
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| End bp | 2526069 |
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| Gene Length | 2838 bp |
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| Protein Length | 945 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640163755 |
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| Product | endonuclease/exonuclease/phosphatase |
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| Protein accession | YP_001094295 |
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| Protein GI | 127513098 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2374] Predicted extracellular nuclease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.160261 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTACCA AAGCAAGCGC GCTTGCCTTG GCGATAGGTG GTGTCTCCAC CTTTGCCCAG
GCCGCAGACG ATCTGATCAT CTCTGAGTAT GTAGAAGGCA GCAGCAACAA TAAGGCCGTC
GAATTCTACA ATCCCACCGG CGCCGCCATC GATTTAAGTC AATATCAACT CGAGTTCTAC
TTTAACGGCA GCACCAGTGC AGGCTCTACC ATAGCCCTTA CCGGTAGCCT GGCCGCCGGC
AAGACCTATG TTCTGGCCGA CAACGATGCC GCCGCTGAGA TCTTAGCGGT CGCCGACCAG
CTAAGCACAG CCAGTTTCTT CAACGGTGAC GACACCTTAG TGCTGCGCAA GCAGGGCCAG
GTGATCGACA GCCTTGGTCA ATTGGGCACA GATCCGGGGT CAGAGTGGGG CAGCGGCGAT
CTGTCGACCC AGAATAACAC CCTGCGCCGG GATCCTAACC AGCTGATCGC CGATACTCAG
CTCGACGATG CCGTGACCCT GGCCACCTGG ACAGGGCATG CACAGGATGA TTTTAGCGAT
CTCGGCCAGT TTGCCGGTCA GGGACCGACA GACCCAACCG ATCCGACGGA TCCTACCGAG
CCACCGGTGG GCTTGGTTTG TCATGATCCG GCCACCAAGA TCTCAGAACT GCAGGGCAGT
GGCGATATCA GCCCGCTCAA TGGTCAGAGT GTAATGGTCG AGGCGATCGT CACCAGCAAC
CAGGAAGCTG GGCTCAAGGG TCTGTTCCTG CAGATGGCCG ATGCCGAGGC TGACGCTGAC
ATCAACACCT CTGAGGGGGT CTTCGTTTAT ACCGGTGGTT CGCTGGGTTA TCAGGCGGGC
GATCGCGTGC GTCTGACCGC CATGGTCAAG GAGTACAACG GCCTGACCGA GCTGACCAAT
GTGAGCGAGC ACGCCTTGTG TGACAGCGCT CAGGCTCTGC CGAGCGCCGC CGAGGTGAGC
CTGCCGCTGG CCCAGAGCAG CGACCTCGAA GCAGTCGAAG GCATGCGCGT ACACTTTACC
CAGAACCTGG TGGTGAACGA GGTCTATAAC CTGGGACGCT ACGGCGAGAT CTTGCTCGGT
AGTAAGCGTC ACTTCATCGG GACTCAGGTG GCCGAGCCTG GCAGCGAGGC GCTGGCGGTG
AGTCAGGCCA ACGCCTTAGA CTCAGTGCTG CTGGACGATG GGTTAACCTC GCAAAATCCA
GATCCTGTGC GTTACCCAGC ACCTGGCCTG AGTGCCGACA ATACTGTGCG TGTGGGTGAC
TCGATCACAG AGCTTCACGC CGTGATGCAC TATGGCTTTG GCAAGTACCG TCTGATGCCA
ATTGATACGG TTAACTTCGT GGCGACCAAC CCAAGAAGCA GCGAGCCAGC TTTGGCCGCC
GGCGGTAACC TCAAGGTCGC CAGCTTCAAC GTACTGAACT ACTTTAACGG CGATGGCCTG
GGCGGAGGCT TCCCGACGGA TCGCGGCGCC GACACGCCAA GCGAATTTGC CCGTCAGCGC
GCCAAGATCA TCAGCGCCAT GGTCAGCATA GACGCCGACA TCTTCGGCCT GATGGAGATA
GAAAACGACG GCTTTGGTAC TGAGTCGGCC ATCAATGACC TGGTGAGCGG TCTGAACCAG
GCGGTGGGCG AGGCAAGATA TCAATTTATC TCTGCGCCAA CGCCAACCAT AGGCACAGAC
GCCATTACCG TGGGCATGCT GTATCGTAGC GATCGCGTCA GGCCTGTGGG CGCGGCCAAG
GTGCTTTCGA GCGCTAACTC GCCGCTGGAT GAGCAGGGTG AGGTACTGTT TAACGATGGT
AAGAACCGTC CGAGTCTGAC CCAGGCCTTC GAGGTCTTGG TTGAAGATCA ACAACTTGTG
GTGGCGGTGA ACCATCTTAA GTCTAAGGGC AGTGACTGCG TCAGCCTGGG TGACCCAGAC
CTCAACGATG GTCAGGGTAA CTGTAACCTA ACCCGTACCC GCGCGGCGAC CGCCCTGGGG
GCTTGGCTGG CCAGCGAGTA TGGCGAGCTG CCGACCCTGG TGATTGGTGA CATGAACGCC
TATGCCAAGG AAGATCCAAT CGATGCGCTA CGTGGCGCCG GATACCTTGA GCTGTTCGAC
CATCTGGGCA AGTCGGGTGC ATACTCCTAT GTCTTCTCCG GTGAAACGGG GCAACTGGAT
CATGCACTGG CCAATACTCA GTTGGCCGAC AGGGTTGTCG ATGTGACCGA GTGGCATATC
AATACCGACG AGCCAAGACT GCTGGATTAC AACGAAGAGT TTAAGTCTGC CGGTCAGATT
GAGTCGCTCT ACAGCAGCGA TGCCTATCGC TCTTCGGACC ATGACCCTGT GGTGATCTCT
TTGCTGCTCG AGCGTGAGAC CATAGCGCCA GTTGCCAGCT TCAGCTATGA GCTGCAGGGC
CGCACCCTGA GCCTGGTGAG CAGCGCCACG GACGAAGATG GCGAAATAGT CGATTATCAA
TGGGATCTTG GCAATGGTGA GACCGCCAGC GGCGAGCAGC TAAGCTATCG CTACGCCAAG
GCCGGTGAGT ACCCAGTGAC CCTGACGGTA ACCGACAACG ATGGTCTGAG CCATAGCGTG
ACTCAGGTGG TGAAGGTACA GGTGAAGCAG CAAAAGCCTG TTGCCGTCAT CGAGCATCTG
GATCTCTGGT TTATGCATCT GTTTGTCTCG CTAAGCTATG ACACAGACGG TGAGATAGTG
TCGCAGTCGT GGAAGTTTAA CAACGGCAGC AAGCAGACGG GTCCTGTGGC AATCAGTTTC
GGTCACCGCG CCAGTAAGGT GAAGCTGACC GTTGAGGATA ACGACGGCCT CAAGGGTAAG
GCTAAGTTAA ACTTCTAA
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| Protein sequence | MFTKASALAL AIGGVSTFAQ AADDLIISEY VEGSSNNKAV EFYNPTGAAI DLSQYQLEFY
FNGSTSAGST IALTGSLAAG KTYVLADNDA AAEILAVADQ LSTASFFNGD DTLVLRKQGQ
VIDSLGQLGT DPGSEWGSGD LSTQNNTLRR DPNQLIADTQ LDDAVTLATW TGHAQDDFSD
LGQFAGQGPT DPTDPTDPTE PPVGLVCHDP ATKISELQGS GDISPLNGQS VMVEAIVTSN
QEAGLKGLFL QMADAEADAD INTSEGVFVY TGGSLGYQAG DRVRLTAMVK EYNGLTELTN
VSEHALCDSA QALPSAAEVS LPLAQSSDLE AVEGMRVHFT QNLVVNEVYN LGRYGEILLG
SKRHFIGTQV AEPGSEALAV SQANALDSVL LDDGLTSQNP DPVRYPAPGL SADNTVRVGD
SITELHAVMH YGFGKYRLMP IDTVNFVATN PRSSEPALAA GGNLKVASFN VLNYFNGDGL
GGGFPTDRGA DTPSEFARQR AKIISAMVSI DADIFGLMEI ENDGFGTESA INDLVSGLNQ
AVGEARYQFI SAPTPTIGTD AITVGMLYRS DRVRPVGAAK VLSSANSPLD EQGEVLFNDG
KNRPSLTQAF EVLVEDQQLV VAVNHLKSKG SDCVSLGDPD LNDGQGNCNL TRTRAATALG
AWLASEYGEL PTLVIGDMNA YAKEDPIDAL RGAGYLELFD HLGKSGAYSY VFSGETGQLD
HALANTQLAD RVVDVTEWHI NTDEPRLLDY NEEFKSAGQI ESLYSSDAYR SSDHDPVVIS
LLLERETIAP VASFSYELQG RTLSLVSSAT DEDGEIVDYQ WDLGNGETAS GEQLSYRYAK
AGEYPVTLTV TDNDGLSHSV TQVVKVQVKQ QKPVAVIEHL DLWFMHLFVS LSYDTDGEIV
SQSWKFNNGS KQTGPVAISF GHRASKVKLT VEDNDGLKGK AKLNF
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