| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2144 |
|---|
| Symbol | |
|---|
| ID | 4923364 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2489931 |
|---|
| End bp | 2490884 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640163729 |
|---|
| Product | response regulator receiver modulated CheW protein |
|---|
| Protein accession | YP_001094269 |
|---|
| Protein GI | 127513072 |
|---|
| COG category | [K] Transcription
[N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG0835] Chemotaxis signal transduction protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000067765 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAAG TGCTAGAGAG TGTCGATCAG CGTACCCAGT TGGTTGGCGA AAACCGTCTC
GAGCTGTTGC TGTTTCGTAT CAATGCGACG CAGCTGTTTG CGATCAATGT GTTTAAGGTC
AAAGAGGTGG TTAAGCTGCC GAAGCTGAGT GCCTTACCCG GTAGCCATCC TAGCATCAAG
GGGGTCGCCA ACATTCGTGG CACCTCGATT CCCGTTATCG ATCTTCGCGC CGCCATCGGT
TTTCAGCCCA TGAACAGCGA CCAGGAAGCA AACCTTATCA TCACCGAATA TAACCGCAGC
GTGCAGGGCT TCATGGTCGG CAAGGTCGAC CATATCATCA ATATGACCTG GAGCGACATC
ATGCCGCCGC CCAAGAGCAC AGGCAGTCAT AACTATCTGA CTGCCATCAC TAAGGTGGAG
GTAGATGGCG CGACTCGTCT GGTCTCCATT ATCGATGTGG AGAAGGTGCT GGCGGAAATC
GTGCACTATG ATATCGCCAT CTCGGAAGGG GTATTGGATG AGGCCTTGGT GGATAAGATG
ATAGGGCGCA AGATCTTAAT TGCCGACGAC TCTGCTACCG CCCGCCGACA GGTAAAAGAT
ACGCTAGCGC CACTGGGTAT TGAGGTGATA GAGACCTCGG ATGGCCTGCA GGCACTTAAG
CTGTTGAAGC GTTGGTGCGA CGAGGGGCGT GATATCAACC AAGAGATACT CATGCTGATC
ACCGACGCCG AGATGCCCGA AATGGACGGT TATCGTCTCA CCTATGAGGT ACGTAACGAC
AAGCGGATGG CCAATCTCTT TATTACCCTC AATACCTCGC TGAGTGGCAG CTTTAACAAT
GCCATGGTGG AGAAGGTGGG ATGCGATCGC TTTATCTCAA AATTCCAGCC GGATCTGCTG
GTGGATGTGG TGCAGGAGCG TCTACGTACT CAGTTGCCCG AACAGGTAAA TTAA
|
|---|
| Protein sequence | MAKVLESVDQ RTQLVGENRL ELLLFRINAT QLFAINVFKV KEVVKLPKLS ALPGSHPSIK
GVANIRGTSI PVIDLRAAIG FQPMNSDQEA NLIITEYNRS VQGFMVGKVD HIINMTWSDI
MPPPKSTGSH NYLTAITKVE VDGATRLVSI IDVEKVLAEI VHYDIAISEG VLDEALVDKM
IGRKILIADD SATARRQVKD TLAPLGIEVI ETSDGLQALK LLKRWCDEGR DINQEILMLI
TDAEMPEMDG YRLTYEVRND KRMANLFITL NTSLSGSFNN AMVEKVGCDR FISKFQPDLL
VDVVQERLRT QLPEQVN
|
|---|
| |