| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2130 |
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| Symbol | |
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| ID | 4923496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2472392 |
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| End bp | 2476063 |
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| Gene Length | 3672 bp |
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| Protein Length | 1223 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640163715 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_001094255 |
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| Protein GI | 127513058 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACAC AGACACTGGA TCCCCTAAGC CTGCCGCTGT CGGGCACTCG CCTCATCGAA
GCCAGCGCAG GTACCGGCAA GACCTACACC ATCGCCGGCC TCTATGTGCG TTTATTATTG
GGCGATAGCC AGCGCGCGCC GCTAAGCTGC GAGCAGATCC TGGTGGTAAC CTTTACAAAC
GCCGCCACCC AGGAGCTTAG GGATCGTATC CGCAAGAAGA TCCAGCTGGC CTACCGCGCC
TTTCTCGGCA TGGAGGTGGA CGATCCGCTA ATCAACACAC TCTATTCTGA GGCTGAGCCC
GAGGCGCGCA GCCAGGCGCT GAAGCGGCTG GATCTCGCGC TCAAGTCGCT GGATGAGGCG
GCGATTTTTA CCATACATGG TTTCTGCCAG CGCATTTTGT CGGACATGGC GTTCGAATCA
TCCCTGCTGT TTGAGTCTGA ATTTACCCTG GATGATAGCG AATACCTGCA CCATGCGGTG
CGCGACTTCT GGCGTGAGGC CTGCTATCCG CTGCCCGGCT ATCTGGCGCA GATCATCAGC
AACAAGTTTA GCGATCCCGA CGGCCTGACC AAGCAGCTAA GGCCGCTTCT CGGCGCCAAT
CAGGCCAGCG TCTCGCCGAC ACCCGAAGCC TTCAGTCAGG TGGCGGAGCG CCTGAGTCAG
AGCCTTTCGA GACTCAGGCT CATCTGGCCG CGCGAGCGCG ATGCCACCCT TGAGCTGCTC
AAGGCGCTGC CGCTCAACGG CACCCGCTTT GGCAAGAAAG ATCAGGGCTA TCCCAAGCTC
GAGACCCTGT TCGCCGCCAT GGATAACTGG GCGGCTCAGC CGCTCTCCCT GCCCGACAAC
AAGGTGCTGG GGGCGCTGGC ATTAGGCGGC CTCAAGCTCA ACAAGGGCGG CGAGAGCCCA
ACGCCGGAAC AGGCGCCGCT ACTTGCCCAT ATCGAGCGCG TCACAGAGAC AATAGACACC
CTAGTGCCCA GCTTCCTCTA TGGCGCCCGC GATGGAATAA AGGCCCGTTT TGCGGCGCAG
AAACAGCTTA AGAATCTGCG CACACCGGAC GATCTGCTTA TCGCTCTGGC CGATGCCCTG
AGCGAAGAAA CCGACCAGGA GCAGGCGCTG GCACGGGCCA TCGCCAAGCG TTTCCCCATC
GCCCTTATCG ATGAGTTTCA GGACACAGAT CCGCTGCAAT ATCAGATCTT CAGCAGCATC
TATCAAGGCC AGCAGGTCTC AACAGACAGC GACCTCGGGC TCTTGATGAT TGGTGACCCC
AAACAGGCGA TCTACGCCTT TCGGGGCGCC GATATCCATA CCTATATCCA TGCCAGGGGC
CAAACGGAAA ACCACTACAG CTTGGACACC AACTACCGCT CCAGCCAGGC CATGATCGAG
GCGGTCAATC AGCTGTTCTC GAGGAGTGAC GATCCCTTTA TCAGCCAGGC GATCCCCTTT
GAGTTAGTCA AGGCATCGCC CGAAGCGGCA GAGAAGCGCC TGGTCGAGAA GGTCCCCCAA
ACGAGCGCGC TACGCCTTAA GCTACTCGGC GAAGATCCTA ACGCCGGGCT CAATAAGGCC
AGCGCCCGCA GCCAGTTGGC CGAAGATGCC GCCAACGAGA TAGCCAGGCT ACTCAACGAG
GCCCAGCGCG GCGAGTGCTT GAAGCAAGAT AAGCCGCTCA AGGCAAAAGA TATCGCCGTG
CTTGTCAGGG ATCGCAACGA GGCCGCCTAT ATCAAAACGG CGCTGAGTAG CCGGGGGATA
GGCGCCGTCT TTCTCAGCCG CGACAGCGTA TTCGATACCC TGGTGGCCAA GGAACTTGCC
CTGGTACTGC TGGCCATCGC CAATCCCAAA GATGAGCGCG CGCTGCGAAG CGCCATGGCC
ACCGCCCTGC TGGGCTATGA TGCCCAGGCG ATCCATGGCT TTAATCTGGA TGAAGATGTG
CGTCAGCAGC AGCTTGAGGC CTTCGACAAC CTGCATCAAA CCTGGCTCAA GCGCGGGATC
ATGCCCTGCA TGATGGCGTT GGCGGCCGAT ACCCGCCTCA TCGAGCGTCT GCTGACTGCA
GATGAGGGGC AGCGCCGCCT GACCGATTTC AGGCACCTGG GCGAACTGCT GCAACAAAAA
GCGATGGAGC TCGACGGCAT CAGCGCCCTG CTCAACTGGT ATCAGCAGAC GCTGATCGAG
GTGAGTAGCA CGGAAGAGGC CCAGCTCAGG CTGGAGAGCG AGCAGAATCT GGTACAGATA
GTCACCATAC ACAAGAGTAA GGGGCTGGAA TATCCCATCT GTTTCTTGCC CTTCGTCAGC
CTGGCCAGAG ACAGTCGCCG CAAGCCTGCA CCTATGCTCT ACCACGAGCA AGATGCCCTG
GTGTGGGATA TCGACCAGAG CGAGGAGGGC TGGGCCAAAT ACAAGGCAGA GAATCTCGCC
GAAGATCTGC GCCTGCTCTA TGTGGCACTT ACCCGCCCCG TGCTCGCCTG CTACTGCTAT
GTCGCCAACC ATTCGCGCTT CACCAAGCGT GACGGGATCA GCAGCCAATT ATTCGAGACT
GCTATCGGCT ACCTGCTGGG CATAGAGACC AATGCCTGCG AGTTTGCCGA CATTCAGGCC
GCCGCCCAGG CGCTGGCGAG CGAGGCGATC TCGGTCGACT TGGTGGAAAG CGATGCGCCC
AAACTAGACT TTGACCCTAT CGACACTGCC GATGCCGTCA AGCTGGCGCC GCGGCCACTT
AACCGCAGGC ACGAGATCCC CTGGCGGGTC GGCAGCTACT CAGGCCTGGT AAAACACTCG
GCTCACGAAC AGATCAGCCC AGGCATGGGC GATGAGGCCT TTCCCGAGCT TGAGCAGTTA
GCTCCCGATA GCGAGCAGCT GTCCAGGTTT AGCTTCGAGC GCGGCGCCAA CGCGGGAAGT
TTCCTCCACT GGGTACTGGA GCAGATAGAC TTTACCTTGG CCGATACCAG CCTAGGCGAT
GAGCTGCCCA AGGCGATGGA GCGCTTCGGT ATCGATAGCG AGTGGCAAGA TATGCTGCAT
GCCTGGTATC TGGATCTGCT GCATACGCCC CTCGATGGTG ATGGGCTGCG TCTTGCGAGC
CTCAGCCAGG CGCAAAAACT GGTGGAGATG GAGTTTTACA TGCCAATAGG CAAGCTCGAT
GCACCTGGGC TCAATCAGCT GCTGAGTCAG TATGGTTATA GCGCCGCCCT GAACTTCGAG
ACCCTAGAGG GGATGCTCAA GGGCTTTATC GACTTAACCT TCGAATATCA GGGCAAGTTC
TATATCGCCG ACTACAAGTC CAATCATCTG GGGGATCACC TGAGTCACTA TGAAAAGCCC
GCCATGCTGC GGGCCATCGC AGGTCACCAC TATGACCTGC AATACATCAT CTATAGCCTA
GCGCTGCATC GCTACCTCAA GCTACGCCTG CCCGGCTACC AGTATGACCA GCATGTGGGC
GGCTGCTACT ACCTCTTCCT TAGGGGCATG TCGGCCGACT CACCGAGTAC CGGCGTCTAC
TACGACAAGC CGCCCCTGGC GCTGATCCAG GCCCTTGACA CCCTGCTTAG CGAGGCTGAG
GCCAGTGAAT CTCAAGCTGA GTCAAAGGCA GAGTCTCAAG CTGAGCCTCA AGCTGAGCCT
GAGTCGCACT CGCAAGCAGA CAGGCAATCT GACATGCCAT CAGGCCCAGC ACAAGGAGAG
CTAGACCTAT GA
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| Protein sequence | MATQTLDPLS LPLSGTRLIE ASAGTGKTYT IAGLYVRLLL GDSQRAPLSC EQILVVTFTN
AATQELRDRI RKKIQLAYRA FLGMEVDDPL INTLYSEAEP EARSQALKRL DLALKSLDEA
AIFTIHGFCQ RILSDMAFES SLLFESEFTL DDSEYLHHAV RDFWREACYP LPGYLAQIIS
NKFSDPDGLT KQLRPLLGAN QASVSPTPEA FSQVAERLSQ SLSRLRLIWP RERDATLELL
KALPLNGTRF GKKDQGYPKL ETLFAAMDNW AAQPLSLPDN KVLGALALGG LKLNKGGESP
TPEQAPLLAH IERVTETIDT LVPSFLYGAR DGIKARFAAQ KQLKNLRTPD DLLIALADAL
SEETDQEQAL ARAIAKRFPI ALIDEFQDTD PLQYQIFSSI YQGQQVSTDS DLGLLMIGDP
KQAIYAFRGA DIHTYIHARG QTENHYSLDT NYRSSQAMIE AVNQLFSRSD DPFISQAIPF
ELVKASPEAA EKRLVEKVPQ TSALRLKLLG EDPNAGLNKA SARSQLAEDA ANEIARLLNE
AQRGECLKQD KPLKAKDIAV LVRDRNEAAY IKTALSSRGI GAVFLSRDSV FDTLVAKELA
LVLLAIANPK DERALRSAMA TALLGYDAQA IHGFNLDEDV RQQQLEAFDN LHQTWLKRGI
MPCMMALAAD TRLIERLLTA DEGQRRLTDF RHLGELLQQK AMELDGISAL LNWYQQTLIE
VSSTEEAQLR LESEQNLVQI VTIHKSKGLE YPICFLPFVS LARDSRRKPA PMLYHEQDAL
VWDIDQSEEG WAKYKAENLA EDLRLLYVAL TRPVLACYCY VANHSRFTKR DGISSQLFET
AIGYLLGIET NACEFADIQA AAQALASEAI SVDLVESDAP KLDFDPIDTA DAVKLAPRPL
NRRHEIPWRV GSYSGLVKHS AHEQISPGMG DEAFPELEQL APDSEQLSRF SFERGANAGS
FLHWVLEQID FTLADTSLGD ELPKAMERFG IDSEWQDMLH AWYLDLLHTP LDGDGLRLAS
LSQAQKLVEM EFYMPIGKLD APGLNQLLSQ YGYSAALNFE TLEGMLKGFI DLTFEYQGKF
YIADYKSNHL GDHLSHYEKP AMLRAIAGHH YDLQYIIYSL ALHRYLKLRL PGYQYDQHVG
GCYYLFLRGM SADSPSTGVY YDKPPLALIQ ALDTLLSEAE ASESQAESKA ESQAEPQAEP
ESHSQADRQS DMPSGPAQGE LDL
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