Gene Shew_2108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2108 
SymbolfadE 
ID4923592 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2439852 
End bp2442299 
Gene Length2448 bp 
Protein Length815 aa 
Translation table11 
GC content56% 
IMG OID640163690 
Productacyl-CoA dehydrogenase 
Protein accessionYP_001094233 
Protein GI127513036 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.35776e-05 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTAGCT TACTTTGGAT TTTTGTGATG CTCTTTGCGT TAGGCGCCTT AGCCTACCTT 
AGAGTATCCC TGCTGACCTC GACCATCATC GCGGCTATCG TGATGGCACT GGGTACAGCA
ACTGCGAGCA TTTCCCCCCT TGCCTGGCTG GTCTTTCTGG CCATCACCCT ACCGCTTAAC
ATAGGCGCCT TCAGAAAAAG CGTGATCACT CGTCCGCTGC TGAAACTCTA TAAAGGGATC
ATGCCGGAGA TGTCTTCCAC CGAAAAAGAA GCGATCGAAG CCGGTACCAC TTGGTGGGAA
GCGGATCTCT TTGCCGGTAA GCCTAACTGG AAGAAGCTGC ATAACTACCC TGTCGCCCGT
CTGACCGCCG AAGAGCAGGC CTTTATCGAG GGACCGGTTG AGGAAGTGTG TAAGATGCTC
AACCAGCATC AGGTTTCTCA TCAGCTCGGC GATCTGCCAG AGTCTATCTG GCAATACCTC
AAAGACAACG GCTTCTTCGC CATGATCATC AAGAAGAAGT ACGGCGGCCT GGAATTCTCT
GCCTATGCCC AGTCTCGCGT ACTGCAAAAG CTGGCGGGCG TCTCTAGCGA GCTGGCCTCA
ACGGTTGGCG TGCCTAACTC TCTCGGTCCC GGCGAGTTGC TACAACACTA TGGTACCCCG
GCGCAGCAAG ATCATTATCT GCCTCGCCTG GCCAAAGGCC TGGAAGTTCC CTGTTTCGCC
CTCACCAGCC CTGAAGCGGG TTCGGATGCC GGCGCCATCC CTGACTTTGG TATCGTCTGT
AAAGGCCAAT GGCAAGGCGA AGAAGTGCTG GGGATGAAAC TGACCTGGAA CAAACGCTAT
ATCACCCTGG CGCCGGTTGC GACCGTGCTG GGTCTGGCGT TTAAGCTGCA AGATCCCGAC
AAACTGCTGG GTGACAAGGA AGAGCTGGGC ATCACCTGTG CCCTGATCCC AACGGATGTG
CCCGGCGTCG AAACCGGTCG CCGTCACTTC CCGCTGAACT GTATGTTCCA AAATGGTCCG
ACACGCGGTA ACGAAGTGTT CGTTCCACTA GACTTTATCA TAGGTGGTCC AGAGATGGCC
GGTCAGGGCT GGCGCATGCT GGTCGAATGT CTCTCTGTTG GACGCGGCAT CACACTACCT
TCTAACTCAG CCGGCGGAAT CAAAACCGCG GCGGTGGCCA CAGGCGCCTA CGCCCGCATT
CGTCGTCAGT TCAAGCTACC TATCGGTAAG CTAGAAGGGA TCGAAGAGCC AATGGCACGC
ATTGGCGGCA ACGCCTATCT GATGGATGCG GTCACAACCC TGACCACCAC AGGTATCGAT
CTTGGCGAGA AGCCTTCGGT GATCTCGGCC ATCGTTAAGT ATCACCTGAC CGACAGAATG
CAGAAATGCG TCATTGACGC CATGGACATT CACGGTGGTA AGGGCGTGTG TCTGGGCGAG
AACAACTACC TGGGCCGAGG CTATCAGGCG GCGCCTATCG CCATTACCGT TGAAGGGGCT
AACATTCTGA CCCGCTCTAT GATCATCTAT GGTCAAGGGG CGATCCGTTG CCATCCCTAC
GTACTGGCCG AAATGGAAGC GGCGTTTGAT CCTGACATGC ACAAGTCACT GAATGACTTC
GACTCAGCCC TGTTCGGCCA TATCGGCTTC ACCACCAGCA ACCTGGTGCG TAGCTTCTGG
CTGGGCTTGA CCTCGAGCTA CTTCTCAAAC AGCCCGTACA AGGACAAGAC TAAGCGTTAC
TATCAGCACA TGAACCGCTT CAGTGCCAAC CTGGCCCTGC TATCGGATCT GGCCATGGCA
ACCCTTGGTG GCGGCCTCAA GCGTAAAGAG CGCGTCTCCG CCCGTCTTGG CGATCTGCTA
AGTCAATTGT ATTTGGCCTC GGCGACCCTG AAGCGCTATC AGGACGAAGG CCGTCAGAGT
GAAGATCTTG TGCTGGTACA GTGGGCGGTT GAAGATGCCC TCTACAAGTT GCAAGACTCG
CTGGACGATC TGCTCAACAA CTTCCCGATG GGACTGGGCC GCGTGCTAAG AGTCATCCTC
TTCCCATTTG GTCGTCCACT TAAGCGTCCA AGCGATGTGC TGGATCATAA GGTGGCTAAG
ATCATGCAAA CCCCTTGTGC CAGCCGTGAT CGCCTGGGTA AAGGCCAGTT CTGGACACCG
TCTCCATTCA ACGCCGTCGG TATTCAGGAG CAGACCTTTA AAGACATTCT GGCCTGTGAA
CCGCTGCACG ATAAGATCTG CAAGGCAACC GGTAAACGCC ACCCCTTCAT GTGGCTGGAT
AAGCTAGCCG CAGAGGGTAA GGCACTGGGG ATCTTGAGCG ATGAGGAAGT AGCACTGCTC
GAGCGCGCCG AAATTGGCCG CATGAAGTCA ATCAATGTCG ATGACTTCGA CCCAGCCGAG
CTCAGAGCCC AGACGCTAGA CGATGAGACA CAACATCAGG CCGCCTGA
 
Protein sequence
MTSLLWIFVM LFALGALAYL RVSLLTSTII AAIVMALGTA TASISPLAWL VFLAITLPLN 
IGAFRKSVIT RPLLKLYKGI MPEMSSTEKE AIEAGTTWWE ADLFAGKPNW KKLHNYPVAR
LTAEEQAFIE GPVEEVCKML NQHQVSHQLG DLPESIWQYL KDNGFFAMII KKKYGGLEFS
AYAQSRVLQK LAGVSSELAS TVGVPNSLGP GELLQHYGTP AQQDHYLPRL AKGLEVPCFA
LTSPEAGSDA GAIPDFGIVC KGQWQGEEVL GMKLTWNKRY ITLAPVATVL GLAFKLQDPD
KLLGDKEELG ITCALIPTDV PGVETGRRHF PLNCMFQNGP TRGNEVFVPL DFIIGGPEMA
GQGWRMLVEC LSVGRGITLP SNSAGGIKTA AVATGAYARI RRQFKLPIGK LEGIEEPMAR
IGGNAYLMDA VTTLTTTGID LGEKPSVISA IVKYHLTDRM QKCVIDAMDI HGGKGVCLGE
NNYLGRGYQA APIAITVEGA NILTRSMIIY GQGAIRCHPY VLAEMEAAFD PDMHKSLNDF
DSALFGHIGF TTSNLVRSFW LGLTSSYFSN SPYKDKTKRY YQHMNRFSAN LALLSDLAMA
TLGGGLKRKE RVSARLGDLL SQLYLASATL KRYQDEGRQS EDLVLVQWAV EDALYKLQDS
LDDLLNNFPM GLGRVLRVIL FPFGRPLKRP SDVLDHKVAK IMQTPCASRD RLGKGQFWTP
SPFNAVGIQE QTFKDILACE PLHDKICKAT GKRHPFMWLD KLAAEGKALG ILSDEEVALL
ERAEIGRMKS INVDDFDPAE LRAQTLDDET QHQAA