| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2108 |
|---|
| Symbol | fadE |
|---|
| ID | 4923592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2439852 |
|---|
| End bp | 2442299 |
|---|
| Gene Length | 2448 bp |
|---|
| Protein Length | 815 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640163690 |
|---|
| Product | acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_001094233 |
|---|
| Protein GI | 127513036 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000635776 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTAGCT TACTTTGGAT TTTTGTGATG CTCTTTGCGT TAGGCGCCTT AGCCTACCTT
AGAGTATCCC TGCTGACCTC GACCATCATC GCGGCTATCG TGATGGCACT GGGTACAGCA
ACTGCGAGCA TTTCCCCCCT TGCCTGGCTG GTCTTTCTGG CCATCACCCT ACCGCTTAAC
ATAGGCGCCT TCAGAAAAAG CGTGATCACT CGTCCGCTGC TGAAACTCTA TAAAGGGATC
ATGCCGGAGA TGTCTTCCAC CGAAAAAGAA GCGATCGAAG CCGGTACCAC TTGGTGGGAA
GCGGATCTCT TTGCCGGTAA GCCTAACTGG AAGAAGCTGC ATAACTACCC TGTCGCCCGT
CTGACCGCCG AAGAGCAGGC CTTTATCGAG GGACCGGTTG AGGAAGTGTG TAAGATGCTC
AACCAGCATC AGGTTTCTCA TCAGCTCGGC GATCTGCCAG AGTCTATCTG GCAATACCTC
AAAGACAACG GCTTCTTCGC CATGATCATC AAGAAGAAGT ACGGCGGCCT GGAATTCTCT
GCCTATGCCC AGTCTCGCGT ACTGCAAAAG CTGGCGGGCG TCTCTAGCGA GCTGGCCTCA
ACGGTTGGCG TGCCTAACTC TCTCGGTCCC GGCGAGTTGC TACAACACTA TGGTACCCCG
GCGCAGCAAG ATCATTATCT GCCTCGCCTG GCCAAAGGCC TGGAAGTTCC CTGTTTCGCC
CTCACCAGCC CTGAAGCGGG TTCGGATGCC GGCGCCATCC CTGACTTTGG TATCGTCTGT
AAAGGCCAAT GGCAAGGCGA AGAAGTGCTG GGGATGAAAC TGACCTGGAA CAAACGCTAT
ATCACCCTGG CGCCGGTTGC GACCGTGCTG GGTCTGGCGT TTAAGCTGCA AGATCCCGAC
AAACTGCTGG GTGACAAGGA AGAGCTGGGC ATCACCTGTG CCCTGATCCC AACGGATGTG
CCCGGCGTCG AAACCGGTCG CCGTCACTTC CCGCTGAACT GTATGTTCCA AAATGGTCCG
ACACGCGGTA ACGAAGTGTT CGTTCCACTA GACTTTATCA TAGGTGGTCC AGAGATGGCC
GGTCAGGGCT GGCGCATGCT GGTCGAATGT CTCTCTGTTG GACGCGGCAT CACACTACCT
TCTAACTCAG CCGGCGGAAT CAAAACCGCG GCGGTGGCCA CAGGCGCCTA CGCCCGCATT
CGTCGTCAGT TCAAGCTACC TATCGGTAAG CTAGAAGGGA TCGAAGAGCC AATGGCACGC
ATTGGCGGCA ACGCCTATCT GATGGATGCG GTCACAACCC TGACCACCAC AGGTATCGAT
CTTGGCGAGA AGCCTTCGGT GATCTCGGCC ATCGTTAAGT ATCACCTGAC CGACAGAATG
CAGAAATGCG TCATTGACGC CATGGACATT CACGGTGGTA AGGGCGTGTG TCTGGGCGAG
AACAACTACC TGGGCCGAGG CTATCAGGCG GCGCCTATCG CCATTACCGT TGAAGGGGCT
AACATTCTGA CCCGCTCTAT GATCATCTAT GGTCAAGGGG CGATCCGTTG CCATCCCTAC
GTACTGGCCG AAATGGAAGC GGCGTTTGAT CCTGACATGC ACAAGTCACT GAATGACTTC
GACTCAGCCC TGTTCGGCCA TATCGGCTTC ACCACCAGCA ACCTGGTGCG TAGCTTCTGG
CTGGGCTTGA CCTCGAGCTA CTTCTCAAAC AGCCCGTACA AGGACAAGAC TAAGCGTTAC
TATCAGCACA TGAACCGCTT CAGTGCCAAC CTGGCCCTGC TATCGGATCT GGCCATGGCA
ACCCTTGGTG GCGGCCTCAA GCGTAAAGAG CGCGTCTCCG CCCGTCTTGG CGATCTGCTA
AGTCAATTGT ATTTGGCCTC GGCGACCCTG AAGCGCTATC AGGACGAAGG CCGTCAGAGT
GAAGATCTTG TGCTGGTACA GTGGGCGGTT GAAGATGCCC TCTACAAGTT GCAAGACTCG
CTGGACGATC TGCTCAACAA CTTCCCGATG GGACTGGGCC GCGTGCTAAG AGTCATCCTC
TTCCCATTTG GTCGTCCACT TAAGCGTCCA AGCGATGTGC TGGATCATAA GGTGGCTAAG
ATCATGCAAA CCCCTTGTGC CAGCCGTGAT CGCCTGGGTA AAGGCCAGTT CTGGACACCG
TCTCCATTCA ACGCCGTCGG TATTCAGGAG CAGACCTTTA AAGACATTCT GGCCTGTGAA
CCGCTGCACG ATAAGATCTG CAAGGCAACC GGTAAACGCC ACCCCTTCAT GTGGCTGGAT
AAGCTAGCCG CAGAGGGTAA GGCACTGGGG ATCTTGAGCG ATGAGGAAGT AGCACTGCTC
GAGCGCGCCG AAATTGGCCG CATGAAGTCA ATCAATGTCG ATGACTTCGA CCCAGCCGAG
CTCAGAGCCC AGACGCTAGA CGATGAGACA CAACATCAGG CCGCCTGA
|
|---|
| Protein sequence | MTSLLWIFVM LFALGALAYL RVSLLTSTII AAIVMALGTA TASISPLAWL VFLAITLPLN
IGAFRKSVIT RPLLKLYKGI MPEMSSTEKE AIEAGTTWWE ADLFAGKPNW KKLHNYPVAR
LTAEEQAFIE GPVEEVCKML NQHQVSHQLG DLPESIWQYL KDNGFFAMII KKKYGGLEFS
AYAQSRVLQK LAGVSSELAS TVGVPNSLGP GELLQHYGTP AQQDHYLPRL AKGLEVPCFA
LTSPEAGSDA GAIPDFGIVC KGQWQGEEVL GMKLTWNKRY ITLAPVATVL GLAFKLQDPD
KLLGDKEELG ITCALIPTDV PGVETGRRHF PLNCMFQNGP TRGNEVFVPL DFIIGGPEMA
GQGWRMLVEC LSVGRGITLP SNSAGGIKTA AVATGAYARI RRQFKLPIGK LEGIEEPMAR
IGGNAYLMDA VTTLTTTGID LGEKPSVISA IVKYHLTDRM QKCVIDAMDI HGGKGVCLGE
NNYLGRGYQA APIAITVEGA NILTRSMIIY GQGAIRCHPY VLAEMEAAFD PDMHKSLNDF
DSALFGHIGF TTSNLVRSFW LGLTSSYFSN SPYKDKTKRY YQHMNRFSAN LALLSDLAMA
TLGGGLKRKE RVSARLGDLL SQLYLASATL KRYQDEGRQS EDLVLVQWAV EDALYKLQDS
LDDLLNNFPM GLGRVLRVIL FPFGRPLKRP SDVLDHKVAK IMQTPCASRD RLGKGQFWTP
SPFNAVGIQE QTFKDILACE PLHDKICKAT GKRHPFMWLD KLAAEGKALG ILSDEEVALL
ERAEIGRMKS INVDDFDPAE LRAQTLDDET QHQAA
|
|---|
| |