| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2080 |
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| Symbol | |
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| ID | 4923616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2404551 |
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| End bp | 2407355 |
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| Gene Length | 2805 bp |
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| Protein Length | 934 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163662 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001094205 |
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| Protein GI | 127513008 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGCCC GTTTTGTTAT GGGAACTGCC GCGTTGACGC TGAGTTTAAT GCTTAGTTTT
CAGGTGTCTG CAGAAGAGCA GCAAGCCCCG CTAGTCTTGG TAATGGGGGA GGACAGCTAC
CCTTATCAGT TCGTCGATGA GAATGGCGAT GTCAAGGGGG TCTTGGTGGA TCTCTGGCGT
GAGTGGTCGT CTCAGACTCA GGTGCCCGTT GTATTTGTCG CCCGTCATTG GCAGGACTCC
TTGAAACAGC TGGCGCAGGG GGATGCCGAT ATCCATATTG GCCTTGGGAT CACCAAGGAG
CGGGATAAAG ATTTCGATTT CGCGGCGCCC ATCGCCTATG TCAGTACCTA TCTCTATGTG
CGCAACACGC TAAAGGGTAA GAAGAGTTTT AGCGATCTTC AGCCCTATCG CATCGGCATA
GTGACCGGCT CATCCCATGA GTCCATTCTC AATCAGCAAG TTAACGGATT AAGTTACCGC
TACTACAATA GCCGCGCCGA ACTGCTCCGC GGTGTGGTGG CAGGCGAAGT GGATGTCTTT
GCCGGCATGG AAGGCTACTT AAAGGATAAC GCCGTTAGCC GCGCCGTTCT GGAAGAGTTT
CCCCTAGATA ATCGTTTGCT TATCAAGAAG ACGGCGCTGG TGCCCGCCGT CAGCAAGGGA
CGGCTGGACC TTATCACAGA GATCAACCGC GGGTTCGACC GCTTGAGTCA AACCAGCCGC
GCCGAGATAG ACAAGCGTTG GCTAGGTTTT AGCCATGACG CCAACACCTT AGTGATTGCC
ACCACGACAG GTATCCAACC CTTTGTCGAT ACCGGCGGCG ATGGCGAGCC ACACGGCCTC
TATATCGACA TCTGGAAGCT CTGGTCTAAG AAGACGGGGA TAGAGGTGGA GTTTCGCCCG
GCCGCTATGG AAGATGGCCT GGATGAACTC AAGTTTCACC GCGCCGATAT CCATGTGGGC
TATCCCGAAA GCGATACCAT GAAGACCAAT CTCACCCGTG CCTGGCGCAC CTATCAGGTG
AAGAGTCGTC TGTTCAGTTA TGGTAAGGCC ATCAATAGTC TGGATGAGCT AAAGGGTAAG
CGTGTCGGCG CCGTTCCCAC CGCGCCTTAT CTGGATAAAC TCAAGCAGGC GTTGCCAAAC
TCCGAGCTCA AGCTCTATAC CGATGTGACC CAGATGATCC AGGCCGCCCA GCAGGGGCAT
ATCGCCGCCT TCGTGGCGGC ATCGGCTTGG ACCCAGCACT ATCTGCTGCG GGCTGAATCC
TGGTCTGACT TTCACCAGTA TCGCAAGCTG GCCTTCACCA CAGACATCTA CGCCTTGACC
CGCAATGAGG ACAAGGGACT GGCTCAGCGT ATTGCGGCGG GCTTTCGCCT GATCAGCAAT
GCCGAGCTCG CCGCGATAGA GAATAAATGG ATCTTGGATA GAGACGACAG GAGCGTGCAG
TCTTTGCTTA ATCCGCTCGC TATCACTGAG GAGCAGCGCC GTTATCTAGA CAGCCTGGGC
ACGCTTAAAG TGGGCTACCT TGCCGCCTGG GCGCCCATGG AGTATCAGGG GCCGTCCGGT
GAGTTTATGG GGATCAACAG CGAGATCAGC CACTGGGTCG CCGAGCAGCT GGGCTTAACC
ATAGAGGGTG TACCGTTCGA TCGCTGGAGC AGCCTGCTAG AAGCACTTAA ACAAGGCGAA
ATCGATATCG TCGGCAGCGT CGCTCACACG CCAGAGCGGG AACGGGAGAT GCTCTTTACC
ACCCCCTATT GGCCATCGCC CTGGGGCCTG GTGACTAACC TCAGTCAGGT GACTGTGTTT
AACCTGAGTC AGATGAGTGG TAAGCGTCTG GCGATTGTCG AGGGGTATCA TCTCATCGCC
AATCTGATGA ACAAGGCGCT CGGAATCGAG CTGGTGATCG TGCCCAACAG CCGCGCCGGC
GTCGATGCGG TGGCCCAGGG CAAGGCCGAT GCCTTCATCG AGAAGGTGAT CAACATGGCT
ATGGTGCTTA AGGAGTCAGA CTACAAGGCA CTTAAGATGT CTGTGCTGGC GGACTTTTCC
CAGCAGCAGA GCCATTTCGC CCTGAGCCCT AAGTTTGCTG CGCTGGTGCC CCTGTGGGAT
CAGGCCATCG CCCAGATCAC CCCAGAGCGG CAAGAGGAGA TTTATCAGCA CTGGGTAAAA
GAGGAACCTA GCAGTTGGAA GACTTGGGTC AACTATCAGA GCGCCTTCTA TCTTCTGGCG
CTACTCAGCT TTGTGGTGTT TGTCTATCTT ATTTGGCGCG CTCAGCGTAG CCGCCTGGCG
GCGGCCAAGG AGCTTGCCCA TGAGCTGACG CGGGCAGGGC AGTTCGATGC ACTCACCGGT
TTGCCGAATC GCAGCCTGCT CGATGACAGA TTGCAGCAGT CTGTGCTCAT ACATCGCCGC
GAGATGCAGC CCTTTGCCGT ACTCTTTATC AGCTTCGATA ACATGCGTGA GATCAACCAG
ACCTATGGCC ATCAGGTGGG CGACAGGGTA TTGGCCAAGG GCGCGCAGCG CCTCAAGTCT
GCGGTGCGTA AGTCTGATAC CCTGGCGCGT TTCGGCGGCA ACGAATTTGT GATGGTGCTT
AATCGCAGCA AAGATCTCGA TACCGTGTGC CAGGTGGCCG ATGGCATAGT CGGTGGCTTT
AGCGCCCCCT TTGCGATCAA CGGCCTGGAT GTGGCACTAT CGGTCAGCAT AGGGGTGGCC
ATGTTCCCAA GCGATGGCGA TACTGTGGTG GAGCTACTCA AGACCGCCGA CAAGCTGATG
TCGCGGGCGG TGAAACAGGG CGGGCGCTGT TACCAGAGTG CCTGA
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| Protein sequence | MIARFVMGTA ALTLSLMLSF QVSAEEQQAP LVLVMGEDSY PYQFVDENGD VKGVLVDLWR
EWSSQTQVPV VFVARHWQDS LKQLAQGDAD IHIGLGITKE RDKDFDFAAP IAYVSTYLYV
RNTLKGKKSF SDLQPYRIGI VTGSSHESIL NQQVNGLSYR YYNSRAELLR GVVAGEVDVF
AGMEGYLKDN AVSRAVLEEF PLDNRLLIKK TALVPAVSKG RLDLITEINR GFDRLSQTSR
AEIDKRWLGF SHDANTLVIA TTTGIQPFVD TGGDGEPHGL YIDIWKLWSK KTGIEVEFRP
AAMEDGLDEL KFHRADIHVG YPESDTMKTN LTRAWRTYQV KSRLFSYGKA INSLDELKGK
RVGAVPTAPY LDKLKQALPN SELKLYTDVT QMIQAAQQGH IAAFVAASAW TQHYLLRAES
WSDFHQYRKL AFTTDIYALT RNEDKGLAQR IAAGFRLISN AELAAIENKW ILDRDDRSVQ
SLLNPLAITE EQRRYLDSLG TLKVGYLAAW APMEYQGPSG EFMGINSEIS HWVAEQLGLT
IEGVPFDRWS SLLEALKQGE IDIVGSVAHT PEREREMLFT TPYWPSPWGL VTNLSQVTVF
NLSQMSGKRL AIVEGYHLIA NLMNKALGIE LVIVPNSRAG VDAVAQGKAD AFIEKVINMA
MVLKESDYKA LKMSVLADFS QQQSHFALSP KFAALVPLWD QAIAQITPER QEEIYQHWVK
EEPSSWKTWV NYQSAFYLLA LLSFVVFVYL IWRAQRSRLA AAKELAHELT RAGQFDALTG
LPNRSLLDDR LQQSVLIHRR EMQPFAVLFI SFDNMREINQ TYGHQVGDRV LAKGAQRLKS
AVRKSDTLAR FGGNEFVMVL NRSKDLDTVC QVADGIVGGF SAPFAINGLD VALSVSIGVA
MFPSDGDTVV ELLKTADKLM SRAVKQGGRC YQSA
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