Gene Shew_2048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2048 
Symbol 
ID4923732 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2363612 
End bp2365084 
Gene Length1473 bp 
Protein Length490 aa 
Translation table11 
GC content52% 
IMG OID640163623 
Productglucose-6-phosphate 1-dehydrogenase 
Protein accessionYP_001094173 
Protein GI127512976 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0364] Glucose-6-phosphate 1-dehydrogenase 
TIGRFAM ID[TIGR00871] glucose-6-phosphate 1-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000103932 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.421774 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCATGA CATCACCAGA AGCCAAAGCT TGTGATTTTG TATTGTTCGG CACCAAAGGC 
GATCTCGCCA GACGTAAGTT ACTCCCTTCT CTTTATCAGC TGGATAAGGC AGGTCTACTC
AATGAGGAGA CTAAGATAGT CGGAGTAGCC AAAGACGCCT TTAGCCATGA TGAGTATCAG
GAGCTGGTTG TCACGGCATT AAAGAGCTTC GTTAAAGAAG CCCTGTGTGA TGAAACCCTC
GAGCGATTCC TAAAGCGCTG TGTTTATATT GGGACTAACT TCACCGAGGC TGAAGGTTAC
AGTGCCTTCC ATGAGATCCT CGAGCCCAAG AAGCGCGTCA TGGTGAACTA CTTCGCGACG
CCGCCGGCCA TCTTCGGCGA TATCTGTCGC TGCCTGCATG AACAAAACCT TATCTATCCT
GATACCCGTG TCGTCCTCGA AAAGCCCATC GGCTCAGATC TCGCTTCTTC TAAAGTCATC
AACGATCAAG TCAGCGCCTA CTTTAATGAA AACCAGGTCT ATCGTATCGA CCACTACCTA
GGTAAAGAGA CGGTACAGAA CCTGATCGCG CTGCGATTCG CCAACTCCTT GTTTGCCTCT
AAGTGGGATA ACCGTACGAT TGATCATGTG CAGATCACCG TTGCCGAAGA GGTGGGCATC
GAAGGGCGTT GGGGCTATTT CGATAAAGCC GGTCAGATGC GCGACATGAT CCAAAACCAT
TTGCTACAGG TACTTACCTT GGTCGCCATG GATCCGCCGG TAAACCTAGA TGCTGACAGC
ATTCGCGATG AGAAGGTAAA AGTGCTTAAG TCACTGCGTA AGATAGATGC CGATAACATC
TATGAAAACA CGGTGCGCGG ACAGTACTCG GCCGGTTTCC TCAAAGGGGC GCCAGTGCCT
GGCTACTTGG AGGAAGAGGG CGCAAATACT CAGTCTCACG CCGAAACCTT CGTCGCCCTG
CGCGTCGATA TCGACAACTG GCGTTGGGCC GGTGTGCCTT TCTATCTGCG TAGCGGCAAG
CGTATGCCGA CCAAGAGTTC TGAAATCGTT GTCTATTTCA AGAACCCACC ACACAACCTG
TATCGCTCAA GCTACCGTAA CCTGCCGCCA AACAAGCTGA CGATTCGTCT GCAACCTCAC
GAAGGCGTTG AGATCCAGAT GATGAACAAG GTGCCGGGTC TTGAGCAGAA ACAAAGACTG
CAAACCACTA AGCTGGACTT GAGTTTCTCC GATACTTTCA AGAACGATCG TATCGCCGAT
GCCTATGAGC GTCTGCTGCT CGAAGCCATG CTGGGTAATC AGGCGCTATT CGTACGCCGC
GATGAAGTTG AGCAGGCATG GACCTGGGTC GACGGCATCA TTCAGGCGTG GGAAGAGAGC
AATGAGAAGC CTAAGCCATA CCCAGCCGGT AGCTGGGGCC CTGTGGCCTC AGTTGCTTTG
ATCGCTAAAG ACGGCCGCTC TTGGGACGAA TAA
 
Protein sequence
MGMTSPEAKA CDFVLFGTKG DLARRKLLPS LYQLDKAGLL NEETKIVGVA KDAFSHDEYQ 
ELVVTALKSF VKEALCDETL ERFLKRCVYI GTNFTEAEGY SAFHEILEPK KRVMVNYFAT
PPAIFGDICR CLHEQNLIYP DTRVVLEKPI GSDLASSKVI NDQVSAYFNE NQVYRIDHYL
GKETVQNLIA LRFANSLFAS KWDNRTIDHV QITVAEEVGI EGRWGYFDKA GQMRDMIQNH
LLQVLTLVAM DPPVNLDADS IRDEKVKVLK SLRKIDADNI YENTVRGQYS AGFLKGAPVP
GYLEEEGANT QSHAETFVAL RVDIDNWRWA GVPFYLRSGK RMPTKSSEIV VYFKNPPHNL
YRSSYRNLPP NKLTIRLQPH EGVEIQMMNK VPGLEQKQRL QTTKLDLSFS DTFKNDRIAD
AYERLLLEAM LGNQALFVRR DEVEQAWTWV DGIIQAWEES NEKPKPYPAG SWGPVASVAL
IAKDGRSWDE