Gene Shew_2042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2042 
Symbol 
ID4923771 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2357797 
End bp2358210 
Gene Length414 bp 
Protein Length137 aa 
Translation table11 
GC content52% 
IMG OID640163617 
ProductMarR family transcriptional regulator 
Protein accessionYP_001094167 
Protein GI127512970 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0690708 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAATG ACCTATTGAG CCACACCATA GTCGAATTTT ATGAAAAGCT CTCGTCTTGG 
GAGATGGCCG TAGTCAAGGA TGCTGGCCAC TCCTTGCCTC AGATCCATGC CGTAGAGATT
TTGGGCGGCA ATGGTGACAT GCGGATGAAA GAGTTGGCGG AGAAAATGGG GATCACCACA
GGTACTCTGA CGGTGCAGAT CGATAAGATG GAGCTGGCGG GTCTGGTGGC ACGCAAGGCC
CACCAGCAAG ACAGACGCTC GATTCTGGTT GGATTAACCG AGCAGGGGCA GGCTGTCTAC
CGGGAGCATG ACCAACTGCA CCATGGCTTG TCCGATCAAC TTACCGCTAA GTTCTCCGAC
AGCGAACGTG AGCTCTTGCT GAGTTTTTTT CAGCGCATGA ACAGCGAGTT TTAA
 
Protein sequence
MNNDLLSHTI VEFYEKLSSW EMAVVKDAGH SLPQIHAVEI LGGNGDMRMK ELAEKMGITT 
GTLTVQIDKM ELAGLVARKA HQQDRRSILV GLTEQGQAVY REHDQLHHGL SDQLTAKFSD
SERELLLSFF QRMNSEF