| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1976 |
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| Symbol | |
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| ID | 4921004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2284251 |
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| End bp | 2286653 |
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| Gene Length | 2403 bp |
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| Protein Length | 800 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640163545 |
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| Product | putative ATP-dependent protease La-relatedprotein |
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| Protein accession | YP_001094101 |
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| Protein GI | 127512904 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1067] Predicted ATP-dependent protease |
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| TIGRFAM ID | [TIGR00764] lon-related putative ATP-dependent protease |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000551631 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.8017 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAATTT CTCCTCTTGC CAGTGACAAG CTTTATCGTT CTTCTACACT CGCCCTACTC
GATCCCAGTA TTAAATCGAC AAAACAGCTG ACGCCGCTAA ATGAGATCGT TGGCCAGGAA
CGGGCCCAAC AGGCAGTAGA GTTTGCCATG TCGATGAAAG ACAAGGGCTA TAACATCTAC
GCCATCGGCC GAAATGGTCT AGGTAAGCGC ACTATGGTGA TGCGTTACCT GGACAGGTAT
GACCCTAACG GTCATCACCA GCTGTTCGAC TGGTGTTATG TGGTCAACTT TGACGATGCC
CGAACCCCTA AGGTGCTCAA GCTACCTAGA GGTCAGGCCC AGGCCTTCAA GGCAGACATC
GAAAACTTGA TGAAACGTCT GGTCAAGGCC CTCCCCTTAG CCTTTGACAA CGAGCTCTAC
TATTCACGGG CCGAAAAGCT AAAGGCGCAG TTGGCCGACA AGCAGGAGTC GGCACTGGGT
CAGATCACCA AAGAGGCCGC CGCTAAGCAG ATCAGCCTGT CTATCAACCC TCAGGGCAGC
TACGAGCTAG TCGCCATGAA TGGCGAGGAG CCTCACACCG AGTCGAGCTT TGCCGAGCTT
AGCGCTAAGG AACAGGCCAG ACTCGAGAAA AACATCGGTT CATTAGAGTC TAAGCTGCGT
GAGGTGGTGC GTAAGTTCAC CGCCTGGGAA GAGAGCTACT CGGATAAACA GCAGAAGCAT
GACGAGCAGG TAGCCCAGGA AGTGTTAGTG CATCTGCTTG AACCTTTGAA GGAAAGTTAT
GCTCAATATC CCGAGGTGAA GGCTCACCTT AATGAGATGC ATAAAGATAT CTTAGATAAT
CTGGATATCT TCCTCGAGCA AAATGAAGAG CAAATCGCCC TCTCCTACGC CTCATTGGCC
AAGAAGATGC CGCGGCGCTA CCAGGTCAAT GTACTGGTTA ACCATGGCGA TATCCCCATG
CCGATTGTGA TTGAGGAGAG TCCCAACTAT CACAACATCT TCGGCTATAT CGAAAACGCG
ACCTATAAGG GCACCATCTT TTCCGATTTC TCCCTGATCC GCCCTGGTAG CCTGCATAAG
GCCAACGGCG GAGTGTTGAT GATCGACGCC ATCAAGGTAT TGGAACAGCC CTATGTGTGG
GACGGTCTGA AGCGCGCGCT TCGCTCACGA AAACTCAGCC TGAGCTCCCT CGAGCGCGAG
GTGACGTTGT CGGGCACCAT CTCGCTGGAC CCTGAGGCCA TCCCATTAGA TGTGAAGATT
ATTCTTTTTG GTGATTACCA GACCTACCAG TTATTGCAGC ACTATGACCC TGAATTTAAA
GAGCTATTTC GAGTCACCGC CGATTTTGAA GATGAGATGC CACGTACCGA TGCCTCCGAG
GTGCAGTACG CGAAATTTAT CTCCAGTATC GTCGTGGGCA ACAAGATGCT GCACTGTGAC
CGCGGCGCGA TAAAACGTAT CATAGAGTTC AGCGCGCGCC AGGCCGATGC CCAAAACAAG
TTGTCGCTAC ATTCGGCGGA TATCGCCAAC TTGCTGCGTG AATCTAACTA TGTGGCCCGC
ACCAGTAAGT CGAACATGAT ACGCGCCGGC CATGTGGAGC AGGCGCTGCA TAACCATGAA
CTCAGGGTCT GTCGTCTGCG CGACTATGTG ATGCAGAGCT TTATCAACGG CACAACCCTC
ATCGATACCC AAGACAGTGT GGTGGGTCAG ATCAACGCTT TGTCTGTGGT GGCGACATCG
GATCATCAAT TTGGCGCCCC GAGTCGTATC ACCGCCAGCG TTTCTCTCGG TGAAGGCGCC
GTATTTGATA TCGAGCGCAA GGTAGAACTC GGCGGTCAGA TCCACTCAAA AGGCGTGATG
ATTTTAACCG CTTATCTTGC GACTATCTTC GGCCAGACGG ATAAGATCCC GCTAACCACA
CACCTCACCT TCGAACAAAA CTATTCGGGT GTCGACGGTG ATAGCGCCTC GATGGCAGAG
CTGTGCGCCA TCGTCTCCGC CTTTGCCAAG GTGCCACTGC GCCAGGATGT CGCCATCACA
GGTTCGATGA ATCAATTTGG TCAGGCGCAG CCCATAGGCG GGGTTAACGA GAAGATTGAA
GGCTTCTTCG ATGTTTGTAA GATCAAGGGA CGCCATAAGG GACAAGGGGT CATCATTCCG
CGCACTAATG TGCAAAACCT GATGTTAAGA GCGGATATTG TCGATGCCGT GAACAAAGGA
GAATTCTCTA TCTGGGCTAT CGAGCATGTG GATCAGGCAG TTGAGATCTT AACCGGTATT
CCAGCCGGGG AACGCGATTT CGAATTCGAA GATTATCCGA AGGAAAGCCT CTATGCCCTG
GCCGATGCAA GGTTGCAGAA ACTAAGAGAC CACGTTAAAC GCACGCAAAA GGCTAAGGTT
TAA
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| Protein sequence | MSISPLASDK LYRSSTLALL DPSIKSTKQL TPLNEIVGQE RAQQAVEFAM SMKDKGYNIY
AIGRNGLGKR TMVMRYLDRY DPNGHHQLFD WCYVVNFDDA RTPKVLKLPR GQAQAFKADI
ENLMKRLVKA LPLAFDNELY YSRAEKLKAQ LADKQESALG QITKEAAAKQ ISLSINPQGS
YELVAMNGEE PHTESSFAEL SAKEQARLEK NIGSLESKLR EVVRKFTAWE ESYSDKQQKH
DEQVAQEVLV HLLEPLKESY AQYPEVKAHL NEMHKDILDN LDIFLEQNEE QIALSYASLA
KKMPRRYQVN VLVNHGDIPM PIVIEESPNY HNIFGYIENA TYKGTIFSDF SLIRPGSLHK
ANGGVLMIDA IKVLEQPYVW DGLKRALRSR KLSLSSLERE VTLSGTISLD PEAIPLDVKI
ILFGDYQTYQ LLQHYDPEFK ELFRVTADFE DEMPRTDASE VQYAKFISSI VVGNKMLHCD
RGAIKRIIEF SARQADAQNK LSLHSADIAN LLRESNYVAR TSKSNMIRAG HVEQALHNHE
LRVCRLRDYV MQSFINGTTL IDTQDSVVGQ INALSVVATS DHQFGAPSRI TASVSLGEGA
VFDIERKVEL GGQIHSKGVM ILTAYLATIF GQTDKIPLTT HLTFEQNYSG VDGDSASMAE
LCAIVSAFAK VPLRQDVAIT GSMNQFGQAQ PIGGVNEKIE GFFDVCKIKG RHKGQGVIIP
RTNVQNLMLR ADIVDAVNKG EFSIWAIEHV DQAVEILTGI PAGERDFEFE DYPKESLYAL
ADARLQKLRD HVKRTQKAKV
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