| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1973 |
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| Symbol | |
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| ID | 4921405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2281228 |
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| End bp | 2282277 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640163542 |
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| Product | porin |
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| Protein accession | YP_001094098 |
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| Protein GI | 127512901 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.629836 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.321076 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGATTA TGAAAACTTT CCCACTTACA TTATTGGCGA CGAGCCTGTT TGTCGGCCCT
CAAGTCATGG CCGAAGAACT TGTCGATTTT TATGGCCGAC TCGATTATTC GGTAACACAT
TCCGACAGCG GTAGCGCGAC CCATAGCGGC AAAAGCGGGA CTATTCTCGA AAACAACTTC
AGCCGTATCG GGGTAAAAGG GCAGACCGCG CTAACCACAG ACTGGTCACT ATTTTACAAA
ATTGAGGTTG GGGTGAACGG TGCGCAGCAA GATAAAGCGA GTAAGCCATT TTCTGCCCGT
CCAACCTTTA TCGGCTTTAA ACATTCAAGC ATGGGGCAAC TAGCGGTTGG GCGCATCGAT
CCCGTATTTA AAATGAGTAA GGGGTTTGCC GATGCCTTTG ATAACTATAG CCTAAAGCAT
GATCGGCTAA TGCCTGGCGA TAAGCGCCAT GGTGACTCAT TGGAATACAA GAGCCCTAAG
TGGAACAAGC TACAATTGGG TGTGAGTTAC CTGATGGAAG ACAACTACTT TAACGACTCT
GATCTGCGTA AAGATAACGG TAACTATCAA ATCGCTGTGA CCTATGCAGA TAAGTTCTTT
AAAACGAGTA ACTTTTATCT TGGCGTTGCC TATTCCGATG GCATCGAAGA CATTAAAGCC
ACTCGTTTAG TCGGCCATGT GAAATTCGAT AACGTAAAGC TAGGCACCAT AATTCAGCAA
ACTGAACTCG TTAACCCGAC TAAAACACAT TATCAAGAGC GTGATGGTGT CGGTTACATC
GTAAGTGCAA CGTATCAGAT TGAACAACTA TTGTTGAAGG CTCAATACGG TAGCGATGAT
TCGAGTACGG GAAAAATTGC GGCTCGCGTA TATGATGTAC TCGGCGAGTC AGTTGCTGCT
GTACCTGAGG TGTCTCAGTG GGCAGTTGGC GCAGAGTACC GTTTATCTAA ATCTGCTCGT
ATCCACACTG AAATCGGTCA ATTTGATGTG AAGCAGTATG AAGACTTTGA TGACACCGTC
GTGAGCTTAG GTTTCCGTTA CGACTTCTAG
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| Protein sequence | MMIMKTFPLT LLATSLFVGP QVMAEELVDF YGRLDYSVTH SDSGSATHSG KSGTILENNF
SRIGVKGQTA LTTDWSLFYK IEVGVNGAQQ DKASKPFSAR PTFIGFKHSS MGQLAVGRID
PVFKMSKGFA DAFDNYSLKH DRLMPGDKRH GDSLEYKSPK WNKLQLGVSY LMEDNYFNDS
DLRKDNGNYQ IAVTYADKFF KTSNFYLGVA YSDGIEDIKA TRLVGHVKFD NVKLGTIIQQ
TELVNPTKTH YQERDGVGYI VSATYQIEQL LLKAQYGSDD SSTGKIAARV YDVLGESVAA
VPEVSQWAVG AEYRLSKSAR IHTEIGQFDV KQYEDFDDTV VSLGFRYDF
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