| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1971 |
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| Symbol | |
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| ID | 4921403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2278482 |
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| End bp | 2279660 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640163540 |
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| Product | ApbE family lipoprotein |
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| Protein accession | YP_001094096 |
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| Protein GI | 127512899 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.196908 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAAAGC CAGCGCTGCT CGCCAATATT TTTATAATAG CCTGTTTGAC GGCTACATCC
ATTTTTGCCG CAAGTGACGA GGATGTATTC AAACTGGCGA AAGACAAATA CTCGTCAGAA
ATATTAGATA GTTACTACAG CTGTGAAGAT AATGCGGTGA TCACCTTAGA TAACCAGACC
GCAAGCCTGA CGACATTAAA GTATTTTGGC ACCTCTATCA CCATCAGCCT TTATCAAGCA
CCAACTGAGC AGACTCGGGC GAGCCTATGT CGAGCGCTTT CGGTGATCCA GGAGTATCAC
TATCTCGCAT CGGATTATTC TACCTATCCC CATGTCACCA ACGTTAAAAG CGTCAATGAG
GCACCAGGAC AGAGTCATGA TATCGACCCT CAATTGACGG CGTTAATCGC ATCGGCCATC
GATTGGCATG AACAGAGTCG AGGGCGGTTT AACATCGCGC TGTCGCCGGT GATCGCCTTG
TGGCGAGCGC AAAGGTTTGC GTGCGAGAAA CAAAAGGATA ACTGCTCAAT TCCCGATGAA
AGGGCACTAA AACAAGCCGC AGAGCATATC GATGTCGATA AGATCCACCT GGACAGGCGG
GCCAACAAGA TCCGGTTGGC CGAAGGGATG AGCATAGATC TCGGCGGCAT CGCCAAGGGC
TGGATGGTAG AGAAGCTCTA TGATCAGCTC ATACGCGATG GCATGAGCCG GTTCGTTATC
AATGCTGGCG GTAACATACG CCACTATGGC CTACACCCAA GCGGGCGCTA TTTTAATATC
GCTATCGAAG ATCCCATCTG TAGGCAGAAT CACTATCGCT CATCCAAATG CCAGTCTGAA
CAAGGCCGTT ATCACGAGGT CATCGCTGGC AGCGACTTAA CAGTCGTCAG CAGTGGTAAC
TACTTAAAGT ACTTTATGGT CGATGGAAAG AAGTACCATC ATATCATAGA CCCTAAAACC
CTCTACCCAG AGACCGAAGG CATATCTGTG ACCGTTATTT TAAGCGACAA TCAAATATAT
GCCGACGTGA TATCAACCAT GTTGTTCTTA ATGCCTGTCG ACGAGGGGCT TGAGTATGTT
AATAGTCACC CATGGATCGA GGCGATATGG TATATCAATG CTAAAGGAGA AAAAATAAAA
TCTACCGGCT TTAATCAATA TACAGAAAAA TTGGAATAA
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| Protein sequence | MIKPALLANI FIIACLTATS IFAASDEDVF KLAKDKYSSE ILDSYYSCED NAVITLDNQT
ASLTTLKYFG TSITISLYQA PTEQTRASLC RALSVIQEYH YLASDYSTYP HVTNVKSVNE
APGQSHDIDP QLTALIASAI DWHEQSRGRF NIALSPVIAL WRAQRFACEK QKDNCSIPDE
RALKQAAEHI DVDKIHLDRR ANKIRLAEGM SIDLGGIAKG WMVEKLYDQL IRDGMSRFVI
NAGGNIRHYG LHPSGRYFNI AIEDPICRQN HYRSSKCQSE QGRYHEVIAG SDLTVVSSGN
YLKYFMVDGK KYHHIIDPKT LYPETEGISV TVILSDNQIY ADVISTMLFL MPVDEGLEYV
NSHPWIEAIW YINAKGEKIK STGFNQYTEK LE
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