Gene Shew_1953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1953 
Symbolcmk 
ID4920986 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2258806 
End bp2259498 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content53% 
IMG OID640163522 
Productcytidylate kinase 
Protein accessionYP_001094078 
Protein GI127512881 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0283] Cytidylate kinase 
TIGRFAM ID[TIGR00017] cytidylate kinase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.56815e-08 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value5.48451e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCACAAC GGGCTCCCAT CGTCACTATT GACGGCCCAA GCGGTGCAGG TAAAGGCACT 
ATTAGTCAGA TACTTGCTTC GCGTTTAGGA TGGAAGCTGC TTGATAGCGG TGCCATATAT
CGTGTCTTGG CCCTCGCGGC AATTCACCAC AACGTCGAGT TAGATAACGA AGCCTCGCTG
GCCCTGTTAG CCGCGCATTT AGATGTGCAA TTCATTACGG CTAATGGCAA TGGCATTAAA
GTGGTCCTGG AAGGCGAGGA TGTATCCCAC GCCATCCGTA GCCAGGAGTG CTCGAATGCA
GCCTCAAAAG TCGCGGCTTT CCCCCGCGTT CGTGAGGCGC TTCTTCGTCG TCAGCGCGCC
TTTGCCGAGG CTCCAGGTTT GATCGCTGAT GGTCGCGACA TGGGCACGGT CGTTTTTCCC
ACAAGCCCAG CTAAACTTTA TTTAACCGCG TCAGCTGAGG AAAGGGCCCA AAGGCGCTAT
AATCAGTTGC AGGACAAGGG CTTCGATGTT AATATCGACC GTCTTTTGGC CGAGGTCGTT
GAACGCGATG AGCGTGATAT GAATCGCCCG GTCGCTCCTC TGGTTCCTGC CGAGGATGCG
CTGGTGATCG ATACGACTGG CATAGGCATT GATGAAGTAG TTGAGCTTGC GCTCTCTCAC
ATCAAAGAAA AATTACCTGA TCTTGTTCTC TAG
 
Protein sequence
MSQRAPIVTI DGPSGAGKGT ISQILASRLG WKLLDSGAIY RVLALAAIHH NVELDNEASL 
ALLAAHLDVQ FITANGNGIK VVLEGEDVSH AIRSQECSNA ASKVAAFPRV REALLRRQRA
FAEAPGLIAD GRDMGTVVFP TSPAKLYLTA SAEERAQRRY NQLQDKGFDV NIDRLLAEVV
ERDERDMNRP VAPLVPAEDA LVIDTTGIGI DEVVELALSH IKEKLPDLVL