| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1921 |
|---|
| Symbol | |
|---|
| ID | 4921249 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2218068 |
|---|
| End bp | 2218598 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640163489 |
|---|
| Product | replication initiation regulator SeqA |
|---|
| Protein accession | YP_001094046 |
|---|
| Protein GI | 127512849 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3057] Negative regulator of replication initiationR |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.585982 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000206071 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAAATATA TTGAGATTGA TGAAGAGCTA TATCGCCATA TTGCCAGCAA GACAGAGCGC
ATAGGAGAGA GTGCTTCAGA GATCCTGCGA CGATTACTCG GCCTAGACGT AGAGACGGTT
GCCATGGAGC AGCCTAAGCA GATCAGCCAG CCAGGCCTGG ATAAAGAGGT GGCGCAAACG
CATCAGGCGG CGAGTATCGA CCCCGAGACC TTGATCGACA AGGGGGCACT GGCCCAGCAA
AAAGGCGCCG TTGGCCGTTT CCTGTTTACC TTAGAGGCTA TCTATAAAGC GACGCCTAAT
CAGTTTGACC AGGTGCTGCA GATCCAGGGG CGCGATCGTC TCTACTTTGC GACCTCTAAA
GAATCGCTAC TCAAGGCCAG TAAGTCGGCC AACCCGAAAG AGATTGGCAA CAGTGGCTTC
TGGGTCACCA CCAATAACAA CACGGCGAAG AAGCGCACCA TCCTAAGCGA AGTATTAGGT
CAGTTCGGCG TGCAAGAAAA ACAGATTGAA TCCATTATCG GTCATATTTA A
|
|---|
| Protein sequence | MKYIEIDEEL YRHIASKTER IGESASEILR RLLGLDVETV AMEQPKQISQ PGLDKEVAQT
HQAASIDPET LIDKGALAQQ KGAVGRFLFT LEAIYKATPN QFDQVLQIQG RDRLYFATSK
ESLLKASKSA NPKEIGNSGF WVTTNNNTAK KRTILSEVLG QFGVQEKQIE SIIGHI
|
|---|
| |