Gene Shew_1914 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1914 
Symbol 
ID4921636 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2212362 
End bp2213576 
Gene Length1215 bp 
Protein Length404 aa 
Translation table11 
GC content56% 
IMG OID640163482 
Productaminotransferase AlaT 
Protein accessionYP_001094039 
Protein GI127512842 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0436] Aspartate/tyrosine/aromatic aminotransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000233272 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000266484 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGCGCCCTA TCATTAAATC CAATAAACTC GACACCGTCT GTTACGACAT CCGCGGGCCT 
GTCCATAAGG AAGCCAGGCG CCTGGAAGAT GAAGGCCATC GCATCCTTAA GCTCAACATA
GGTAACCCGG CCCCCTTCGG TTTCGAGGCC CCGGAAGAGA TAGTGCGCGA CGTGATCCTC
AATCTGCCCA GCGCCCAGGG CTACAGCGAG TCCAAGGGGC TGTTTTCCGC GCGCAAGGCG
ATCGTACAGC ACTACCAGAG CCTGGGGCTG TTTGGCGTCG ATATCGAGGA TATCTACATA
GGCAACGGCG TGTCGGAACT CATCGTAATG GCGATGCAGG GCCTGCTTAA CAGCGACGAT
GAGGTGCTGG TGCCCTCACC CGACTATCCT CTGTGGACGG CGGCGGTACA CCTCTCCGGC
GGCAAGGCGC AGCACTATCG CTGCGATGAA GAATCCGATT GGTTTCCCGA TCTCGACGAC
ATCAAATCCA AAATTAGCAG TCGCACCCGC GGCATAGTGC TGATCAATCC TAACAACCCT
ACCGGCGCCG TATACTCCCG CGAGTTACTG CTGGAGATCA TCGAGCTGTG CCGTCAGCAC
GACATCATCT TGTTTGCAGA CGAGATCTAC GACAAGATCC TCTACGATGG TGCCGTACAC
ATTCCGGCAG CGACACTGTC GGACGATATT CTGACCGTGA CCTTCAATGG TCTCTCCAAG
TCCTACCGCG CCGCGGGCTT TCGCGTCGGC TGGATGATGC TCTCGGGTAA CCTCAAGGCC
GCCAAGAGCT ATATCGAAGG CTTGGACATG CTGGCCTCCA TGCGACTGTG CTCCAACGTG
CCCAATCAGC ACGCGATACA GACCGCGCTG GGTGGCTATC AGAGCATCAA CGAGCTGGTG
GCTCCCGAGG GAAGACTCAC GCTGCAGCGC AATACTTGCT ATGAGCTACT CAATCAGATC
CCAGGGGTCA GCTGTAAGAA ACCTAAGGGC GCGCTGTACG CTTTCCCTAA GCTCGACGCC
AAGAAGTTTA ACCTGAGGGA TGATGAGCGA TTGGTGCTGG ATCTCCTCAA AGAGAAGAAG
ATCTTACTGG TCCAAGGCAC CGCCTTTAAC TGGCCAGAGC CGGATCATCT CAGGGTGGTC
TTCCTGCCCC ACAAGGAAGA TCTGCACAAG GCACTGGTGG AGTTCGGTGA CTTCCTCACC
AGCTACAGCC AATAA
 
Protein sequence
MRPIIKSNKL DTVCYDIRGP VHKEARRLED EGHRILKLNI GNPAPFGFEA PEEIVRDVIL 
NLPSAQGYSE SKGLFSARKA IVQHYQSLGL FGVDIEDIYI GNGVSELIVM AMQGLLNSDD
EVLVPSPDYP LWTAAVHLSG GKAQHYRCDE ESDWFPDLDD IKSKISSRTR GIVLINPNNP
TGAVYSRELL LEIIELCRQH DIILFADEIY DKILYDGAVH IPAATLSDDI LTVTFNGLSK
SYRAAGFRVG WMMLSGNLKA AKSYIEGLDM LASMRLCSNV PNQHAIQTAL GGYQSINELV
APEGRLTLQR NTCYELLNQI PGVSCKKPKG ALYAFPKLDA KKFNLRDDER LVLDLLKEKK
ILLVQGTAFN WPEPDHLRVV FLPHKEDLHK ALVEFGDFLT SYSQ