Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1914 |
Symbol | |
ID | 4921636 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2212362 |
End bp | 2213576 |
Gene Length | 1215 bp |
Protein Length | 404 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640163482 |
Product | aminotransferase AlaT |
Protein accession | YP_001094039 |
Protein GI | 127512842 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000233272 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.00000266484 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
| |
Sequence |
Gene sequence | ATGCGCCCTA TCATTAAATC CAATAAACTC GACACCGTCT GTTACGACAT CCGCGGGCCT GTCCATAAGG AAGCCAGGCG CCTGGAAGAT GAAGGCCATC GCATCCTTAA GCTCAACATA GGTAACCCGG CCCCCTTCGG TTTCGAGGCC CCGGAAGAGA TAGTGCGCGA CGTGATCCTC AATCTGCCCA GCGCCCAGGG CTACAGCGAG TCCAAGGGGC TGTTTTCCGC GCGCAAGGCG ATCGTACAGC ACTACCAGAG CCTGGGGCTG TTTGGCGTCG ATATCGAGGA TATCTACATA GGCAACGGCG TGTCGGAACT CATCGTAATG GCGATGCAGG GCCTGCTTAA CAGCGACGAT GAGGTGCTGG TGCCCTCACC CGACTATCCT CTGTGGACGG CGGCGGTACA CCTCTCCGGC GGCAAGGCGC AGCACTATCG CTGCGATGAA GAATCCGATT GGTTTCCCGA TCTCGACGAC ATCAAATCCA AAATTAGCAG TCGCACCCGC GGCATAGTGC TGATCAATCC TAACAACCCT ACCGGCGCCG TATACTCCCG CGAGTTACTG CTGGAGATCA TCGAGCTGTG CCGTCAGCAC GACATCATCT TGTTTGCAGA CGAGATCTAC GACAAGATCC TCTACGATGG TGCCGTACAC ATTCCGGCAG CGACACTGTC GGACGATATT CTGACCGTGA CCTTCAATGG TCTCTCCAAG TCCTACCGCG CCGCGGGCTT TCGCGTCGGC TGGATGATGC TCTCGGGTAA CCTCAAGGCC GCCAAGAGCT ATATCGAAGG CTTGGACATG CTGGCCTCCA TGCGACTGTG CTCCAACGTG CCCAATCAGC ACGCGATACA GACCGCGCTG GGTGGCTATC AGAGCATCAA CGAGCTGGTG GCTCCCGAGG GAAGACTCAC GCTGCAGCGC AATACTTGCT ATGAGCTACT CAATCAGATC CCAGGGGTCA GCTGTAAGAA ACCTAAGGGC GCGCTGTACG CTTTCCCTAA GCTCGACGCC AAGAAGTTTA ACCTGAGGGA TGATGAGCGA TTGGTGCTGG ATCTCCTCAA AGAGAAGAAG ATCTTACTGG TCCAAGGCAC CGCCTTTAAC TGGCCAGAGC CGGATCATCT CAGGGTGGTC TTCCTGCCCC ACAAGGAAGA TCTGCACAAG GCACTGGTGG AGTTCGGTGA CTTCCTCACC AGCTACAGCC AATAA
|
Protein sequence | MRPIIKSNKL DTVCYDIRGP VHKEARRLED EGHRILKLNI GNPAPFGFEA PEEIVRDVIL NLPSAQGYSE SKGLFSARKA IVQHYQSLGL FGVDIEDIYI GNGVSELIVM AMQGLLNSDD EVLVPSPDYP LWTAAVHLSG GKAQHYRCDE ESDWFPDLDD IKSKISSRTR GIVLINPNNP TGAVYSRELL LEIIELCRQH DIILFADEIY DKILYDGAVH IPAATLSDDI LTVTFNGLSK SYRAAGFRVG WMMLSGNLKA AKSYIEGLDM LASMRLCSNV PNQHAIQTAL GGYQSINELV APEGRLTLQR NTCYELLNQI PGVSCKKPKG ALYAFPKLDA KKFNLRDDER LVLDLLKEKK ILLVQGTAFN WPEPDHLRVV FLPHKEDLHK ALVEFGDFLT SYSQ
|
| |