| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1904 |
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| Symbol | |
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| ID | 4921626 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2199247 |
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| End bp | 2200770 |
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| Gene Length | 1524 bp |
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| Protein Length | 507 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163472 |
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| Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
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| Protein accession | YP_001094029 |
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| Protein GI | 127512832 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000338526 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTGTGA CTATAGAACA GCCCATCATC AAGCAAGCGG ACCTCATCGA GAGTGTCGCC
GACGCACTAC AATATATCTC CTATTACCAC CCTAAAGATT TCGTTGATGC CATGGCCGAG
GCCTATGAGC GTGAAGAGAG TGCGGCGGCA AAAGATGCTA TCGCGCAGAT CTTGATAAAC
TCTCGTATGT CCGCCGAAGG CAAGCGCCCG CTGTGTCAAG ACACAGGTAT CGTGACCTGT
TTCGTTAAGA TCGGTATGGG CGTCAAGTGG GACAAGACAG ACATGACAGT GCAGCAGATG
GTGGATGAAG GGGTAAGACG CGCCTACACC AACCCAGATA ACCCGCTGCG CGCCTCTATC
GTTGCCGATC CTGCCGGTGG CCGTAAGAAC ACTAAAGACA ACACTCCATC TGTGGTACAC
GTCGAGATGG TGCCGGGTAA CCATGTTGAA GTCGCCATCG CCGCTAAGGG CGGTGGATCG
GAAAACAAGT CTAAGATGGT GATGCTTAAC CCATCAGACG ATATCGCCGA GTGGGTCGAG
AAGACACTTC CAACTATGGG CGCCGGCTGG TGTCCTCCAG GCATGCTGGG CATAGGCATC
GGCGGCACCG CCGAGAAGGC GGCCGTGATG GCCAAAGAAG CCCTGATGGA CCCAGTCGAC
ATCCATGAGC TGCAGGCTAA AGGCGCCGAA ACCGCAGAAG AGAAGCTGCG TCTGGATATC
TTCGAGCGCG CTAACAAGCT AGGCATAGGT GCCCAGGGCC TTGGTGGCCT GACTACCGTG
CTGGATATCA AGATCAAATC GGCGCCAACC CACGCGGCCT CTAAGCCTGT GGTGATGATC
CCTAACTGCG CGGCAACCCG CCACGTACAC TTCCACCTAG ATGGTTCAGG CCCAGCCGAG
CTGGAGACGC CTAAGCTGGA AGATTGGCCA GAGATCACCC GCGAAGCGGG CGAGGGCGTA
CGCCGCGTGG ATCTTAATAC CGTTACTCAA GCTGACATCG AGCAGTGGAA GAGCGGTGAC
GTGCTGCTGC TAAACGGTAA GATGCTTACC GGTCGTGACG CGGCGCACAA GCGCATTCAA
ACCCTTATCG AGAGCGGTGA AGGCCTGCCA GAAGGCGTCG ATTTCACCGG TAAGTTTATC
TACTACGTTG GCCCGGTCGA TCCTGTGGGT GACGAAGTGG TTGGCCCAGC GGGTCCAACG
ACGGCGACCC GCATGGATAA GTTCACCGAT CTGATGCTGG ATAAGACGGG TCTGATGGGC
ATGATCGGCA AGGCAGAGCG TGGCCCGGCT ACCGTCGAGT CTATCAAGAA GCACAAGGCG
GTTTACCTGA TGGCAGTAGG CGGCGCTGCT TATCTAGTGT CTAAGGCGAT CAAGAAGTCA
CGAGTTGTGG CCTTCGAAGA CCTAGGTATG GAAGCCATCT ATGAGTTCGA CGTGACCGAT
ATGCCGGTAA CCGTTGCCGT AGACAGCGAA GGGGTCAATG CTCACGAAAC CGGCCCTGCC
ACCTGGCGAG TCAAACTTGC CTAA
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| Protein sequence | MSVTIEQPII KQADLIESVA DALQYISYYH PKDFVDAMAE AYEREESAAA KDAIAQILIN
SRMSAEGKRP LCQDTGIVTC FVKIGMGVKW DKTDMTVQQM VDEGVRRAYT NPDNPLRASI
VADPAGGRKN TKDNTPSVVH VEMVPGNHVE VAIAAKGGGS ENKSKMVMLN PSDDIAEWVE
KTLPTMGAGW CPPGMLGIGI GGTAEKAAVM AKEALMDPVD IHELQAKGAE TAEEKLRLDI
FERANKLGIG AQGLGGLTTV LDIKIKSAPT HAASKPVVMI PNCAATRHVH FHLDGSGPAE
LETPKLEDWP EITREAGEGV RRVDLNTVTQ ADIEQWKSGD VLLLNGKMLT GRDAAHKRIQ
TLIESGEGLP EGVDFTGKFI YYVGPVDPVG DEVVGPAGPT TATRMDKFTD LMLDKTGLMG
MIGKAERGPA TVESIKKHKA VYLMAVGGAA YLVSKAIKKS RVVAFEDLGM EAIYEFDVTD
MPVTVAVDSE GVNAHETGPA TWRVKLA
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