| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1890 |
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| Symbol | |
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| ID | 4921770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2180729 |
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| End bp | 2181994 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163458 |
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| Product | glucose/galactose transporter |
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| Protein accession | YP_001094015 |
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| Protein GI | 127512818 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0738] Fucose permease |
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| TIGRFAM ID | [TIGR01272] glucose/galactose transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.621908 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.769175 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAATGA TGCAACAAAG TAGCACGGCT ACCGGGGTTG GCGGTGAGCA GGAGAACTAT
CGTTTTGCGT TAGTCTCCCT GACCTCGCTA TTTTTCATGT GGGGCTTTAT CACCTGTCTG
AACGACATCT TGATCCCCCA TCTCAAGGCG GCGTTTTCGC TCAACTATGC CGAGGCGATG
CTGATCCAGT TCTGCTTCTT CGGCGCCTAC TTCCTGGTCT CTATGCCGGC CGGTAAGCTG
GTTAAGGCCC TTGGCTATCA GAAAGGGATA GTGACAGGTC TGCTGATCGC GGCCTTGGGC
TGCGCACTCT TCTATCCTGC GGCGGCGCTG GCCACCTACG GACTCTTCCT CGGCGCCTTG
TTCGTGTTGG CCTCAGGGAT CACTATTTTG CAGGTGGCGG CGAACCCCTA TGTGAACGCA
CTGGGTAGCG TAGAGACCGC CTCAAGTCGT CTTAACCTGA CTCAGGCCTT CAACGCCCTG
GGTACCACGG TTGCGCCATA TTTTGGCGCC GTGTTGATCC TCTCTGTAGC CGTTGAAGCT
AGCGAGACCC TGACTCAGGC ACAGGCCGAG GCGGAAGTGG TTAAATTGCC TTATCTTATT
TTGGCCACTG CATTAGGCGT CCTGGCGCTG GTATTTGCCA AACTGGATCT GCCGCAGATC
AAAGAACATT GTCAGAGCGG CGAGCAGGGC GAGGTGGTGC ACAATGGCAA GACCAGCGCA
CTGCAATCAC TCCATCTGGT GCTCGGCGCC GTGGGGATCT TCGTCTACGT GGGTGCTGAA
GTGTCTATCG GCAGCTTCCT GGTTAACTTC CTGGCCCAGG ATGACATTGC CGGGCTAAGT
GAGGCCAGCG CCGCGAGTTA CATCACCTAT TACTGGGGCG GGGCCATGGT AGGTCGTTTC
ATCGGTAGTG CCGTGATGCA GAAGGTGCCT GCCGGTACTG TGCTCGGTTT CAACGCCTTA
ATGGCGGCTC TACTGGTTGC ATTGGCGATG ACCAGCACTG GCACCGTGGC CATGTGGGCA
ATTCTGGCGG TTGGCCTGTT CAACTCCATC ATGTTCCCGA CCATCTTCAG CCTGGCGCTG
CGGGATCTCG GCCCTCACAC CTCACAAGGT TCGGGTGTAC TCTGCTTGGC CATCGTTGGC
GGCGCGATCC TACCTTTGCT GCAGGGTGTA CTGGCGGATA ACATAGGTAT TCAGCATGCC
TTCTTCCTAC CGATCATCTG TTATCTGTTC ATTATGTTCT ATGGCGTGAA GGGGTCTAAG
CTCTAA
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| Protein sequence | MAMMQQSSTA TGVGGEQENY RFALVSLTSL FFMWGFITCL NDILIPHLKA AFSLNYAEAM
LIQFCFFGAY FLVSMPAGKL VKALGYQKGI VTGLLIAALG CALFYPAAAL ATYGLFLGAL
FVLASGITIL QVAANPYVNA LGSVETASSR LNLTQAFNAL GTTVAPYFGA VLILSVAVEA
SETLTQAQAE AEVVKLPYLI LATALGVLAL VFAKLDLPQI KEHCQSGEQG EVVHNGKTSA
LQSLHLVLGA VGIFVYVGAE VSIGSFLVNF LAQDDIAGLS EASAASYITY YWGGAMVGRF
IGSAVMQKVP AGTVLGFNAL MAALLVALAM TSTGTVAMWA ILAVGLFNSI MFPTIFSLAL
RDLGPHTSQG SGVLCLAIVG GAILPLLQGV LADNIGIQHA FFLPIICYLF IMFYGVKGSK
L
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