| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1870 |
|---|
| Symbol | |
|---|
| ID | 4924389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2148619 |
|---|
| End bp | 2149647 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640163438 |
|---|
| Product | LacI family transcription regulator |
|---|
| Protein accession | YP_001093995 |
|---|
| Protein GI | 127512798 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00075643 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAACGA AAGCTACCTC TATCGATATC GCTTACCGCG CCGGGGTGTC ACAATCCACG
GTATCGCGGG CATTGCGAAA CAGTCCGCTC GTCAATGAAG AGACGCGCTT GAGAGTACAG
GCCATTGCCA AGGAACTTAA TTACAAGGTC GACAAGAACG CCAGCAACCT GCGCACTCAA
AGCAGTCTGA CCCTGGCGCT GTTATTGTGT GAAGATCCCA CCAACGACGA TTCGCTGATC
AATCCATTCT TCCTCTCCAT GTTGGGTTCT ATCACCCGGG CAACGGCGCA GCAGGGCTAT
GATCTCCTGG TCTCCTTTCA GCAGCTTAGC AGCGATTGGC ACGCCGATTA TGAAGACAGC
AATAAGGCCG ATGGCATTAT TCTGCTCGGT TACGGCGACT ACATGGATTA CGAGGAGAAG
CTCAATAAGC TGGCGGCGCA GAATACTCAC CTAGTGATTT GGGGTCCGGC GCAGCATAAG
TCCTCCGTGC TCTCCATTGG TTGTGATAAC CGTCAGGGGG GCGTGTTGGC CACCGAGCAT
CTGCTGGCCA AGGGGCGGCG TAATATCGCC TTCATCGGCG ATGCCTCAAG CCATAGCCCA
GAATTTCAGG CGCGCTACTT GGGTCATCAA CAGGCGCTCA AGGCGGCAGG TGTGCCGCTA
CAGAAAAACC TGCAGGTGGA TGCCATCAGC ACGGAAAGCT CGGGCTTCGA GGCGGCCAAT
CAACTGCTGG CGCAGAAACG TTCCTTCGAC GCCATCTTCG CCGCCAGCGA TCTCATCGCC
ATCGGCGCCA TGCGGGCGCT GAAAGAGCAG GGGCTGAGGG TGCCTGAGGA TGTGTCTGTC
GTGGGTTATG ACGACATTCC TGTGGCGAGC TTCGCCAATC CGCCGCTGAC CACCATCAAG
CAGAACACTA AACTCGCCGG TGAGATCTTG GTTGAGAGCC TGCTGAAGCA GATCAAGGGG
CAGGAGGTGA GCAATCAGTT GATCCCCACC AGCCTGATCG AGCGCGAGTC CTGCGGCGAA
AAGCGTTAG
|
|---|
| Protein sequence | MTTKATSIDI AYRAGVSQST VSRALRNSPL VNEETRLRVQ AIAKELNYKV DKNASNLRTQ
SSLTLALLLC EDPTNDDSLI NPFFLSMLGS ITRATAQQGY DLLVSFQQLS SDWHADYEDS
NKADGIILLG YGDYMDYEEK LNKLAAQNTH LVIWGPAQHK SSVLSIGCDN RQGGVLATEH
LLAKGRRNIA FIGDASSHSP EFQARYLGHQ QALKAAGVPL QKNLQVDAIS TESSGFEAAN
QLLAQKRSFD AIFAASDLIA IGAMRALKEQ GLRVPEDVSV VGYDDIPVAS FANPPLTTIK
QNTKLAGEIL VESLLKQIKG QEVSNQLIPT SLIERESCGE KR
|
|---|
| |