Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1848 |
Symbol | |
ID | 4924303 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2123316 |
End bp | 2124200 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640163416 |
Product | dihydrodipicolinate synthase |
Protein accession | YP_001093973 |
Protein GI | 127512776 |
COG category | [E] Amino acid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0192558 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0461975 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAAACG GAAGCATCGT AGCCTTAATC ACACCCATGA ATCGTGATGG CTCAGTCGAT TATGCAAGTC TCGAGAAGTT GGTTGAGTAC CATATTGAAC AGGGTACTGA CGCCATCGTT GCCGTCGGCA CGACTGGCGA GTCAGCCACT TTACCTCTTT CAGAACATAT TGAAGTGGTT GCCCACACGG TAAAATTTGC CGCCGGACGC GTCCCAGTGA TAGGTGGTAA TGGTGCAAAC GCCACCGCCG AAGCGATCGA GCTGACCAAG GCGCAGGCCA ACCTAGGTGT GGCCGCCATG CTAGGTGTAA CGCCTTACTA CAACAAACCG ACACCTAAAG GCTTGGTTGC CCATTACAGC GCCGTTGCGG CCGCAACCGA TATCCCACAA ATTCTCTACA ACGTGCCCGG CCGTACTTCG GTGGACATGT TGCCCGAAAC TGTTGCCCAG TTGGTCGACG TGCCAAACAT CATAGGTGTG AAGGAAGCGA CCGGCGATCT AAGCCGCGTG GCTAGGCTGC GCGAGCTGTG TGGCGATGAC TTCATGCTCT ACAGCGGTGA TGACGCCACC GCCCGTGAGT TCCTTACCCT GGGCGGTAAT GGCGTGATCT CTGTGGCCAA CAACATAGTG CCTAAGCAGT TCAAGCTGAT GTGCGATGCG GCCCTTAAGG GCGATCTCGA GGGTGCCCTG AAGGCCGAGG CGCCAATGAA AGATCTGTTC AGCGCGCTAT TTTGCGAGGC CAATCCGATT CCTGTGAAAT GGGCGGCGCA TCGTATGGGG CTGATCAGCC AAGGACATAT TCGCTTGCCA TTAACGGAAC TTTCCGAGCA ATATCATGGT CTGTTGCTAG AAGCGATGAA GAATGCCGGA ATAGAGGTTC AATAA
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Protein sequence | MINGSIVALI TPMNRDGSVD YASLEKLVEY HIEQGTDAIV AVGTTGESAT LPLSEHIEVV AHTVKFAAGR VPVIGGNGAN ATAEAIELTK AQANLGVAAM LGVTPYYNKP TPKGLVAHYS AVAAATDIPQ ILYNVPGRTS VDMLPETVAQ LVDVPNIIGV KEATGDLSRV ARLRELCGDD FMLYSGDDAT AREFLTLGGN GVISVANNIV PKQFKLMCDA ALKGDLEGAL KAEAPMKDLF SALFCEANPI PVKWAAHRMG LISQGHIRLP LTELSEQYHG LLLEAMKNAG IEVQ
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