| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1848 |
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| Symbol | |
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| ID | 4924303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2123316 |
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| End bp | 2124200 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163416 |
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| Product | dihydrodipicolinate synthase |
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| Protein accession | YP_001093973 |
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| Protein GI | 127512776 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
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| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0192558 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0461975 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATAAACG GAAGCATCGT AGCCTTAATC ACACCCATGA ATCGTGATGG CTCAGTCGAT
TATGCAAGTC TCGAGAAGTT GGTTGAGTAC CATATTGAAC AGGGTACTGA CGCCATCGTT
GCCGTCGGCA CGACTGGCGA GTCAGCCACT TTACCTCTTT CAGAACATAT TGAAGTGGTT
GCCCACACGG TAAAATTTGC CGCCGGACGC GTCCCAGTGA TAGGTGGTAA TGGTGCAAAC
GCCACCGCCG AAGCGATCGA GCTGACCAAG GCGCAGGCCA ACCTAGGTGT GGCCGCCATG
CTAGGTGTAA CGCCTTACTA CAACAAACCG ACACCTAAAG GCTTGGTTGC CCATTACAGC
GCCGTTGCGG CCGCAACCGA TATCCCACAA ATTCTCTACA ACGTGCCCGG CCGTACTTCG
GTGGACATGT TGCCCGAAAC TGTTGCCCAG TTGGTCGACG TGCCAAACAT CATAGGTGTG
AAGGAAGCGA CCGGCGATCT AAGCCGCGTG GCTAGGCTGC GCGAGCTGTG TGGCGATGAC
TTCATGCTCT ACAGCGGTGA TGACGCCACC GCCCGTGAGT TCCTTACCCT GGGCGGTAAT
GGCGTGATCT CTGTGGCCAA CAACATAGTG CCTAAGCAGT TCAAGCTGAT GTGCGATGCG
GCCCTTAAGG GCGATCTCGA GGGTGCCCTG AAGGCCGAGG CGCCAATGAA AGATCTGTTC
AGCGCGCTAT TTTGCGAGGC CAATCCGATT CCTGTGAAAT GGGCGGCGCA TCGTATGGGG
CTGATCAGCC AAGGACATAT TCGCTTGCCA TTAACGGAAC TTTCCGAGCA ATATCATGGT
CTGTTGCTAG AAGCGATGAA GAATGCCGGA ATAGAGGTTC AATAA
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| Protein sequence | MINGSIVALI TPMNRDGSVD YASLEKLVEY HIEQGTDAIV AVGTTGESAT LPLSEHIEVV
AHTVKFAAGR VPVIGGNGAN ATAEAIELTK AQANLGVAAM LGVTPYYNKP TPKGLVAHYS
AVAAATDIPQ ILYNVPGRTS VDMLPETVAQ LVDVPNIIGV KEATGDLSRV ARLRELCGDD
FMLYSGDDAT AREFLTLGGN GVISVANNIV PKQFKLMCDA ALKGDLEGAL KAEAPMKDLF
SALFCEANPI PVKWAAHRMG LISQGHIRLP LTELSEQYHG LLLEAMKNAG IEVQ
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