Gene Shew_1825 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1825 
SymboluvrC 
ID4924363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2099943 
End bp2101772 
Gene Length1830 bp 
Protein Length609 aa 
Translation table11 
GC content55% 
IMG OID640163390 
Productexcinuclease ABC subunit C 
Protein accessionYP_001093950 
Protein GI127512753 
COG category[L] Replication, recombination and repair 
COG ID[COG0322] Nuclease subunit of the excinuclease complex 
TIGRFAM ID[TIGR00194] excinuclease ABC, C subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.088783 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACAGATA GCTTTAATGC GACCCAGTTT TTAAAAACCG TTTCCTCCTC TGCCGGCGTT 
TATCGCATGT ACGATGCACA GGGGGTCGTT ATCTATGTGG GCAAGGCCAA AGATCTCAAG
AAGCGCCTCA GCTCCTATTT CAGACGTAAT CTGCCCAACG TCAAGACTCA GGCCTTGGTG
TCTCACATCG CCAATATCGA TGTGACTCTG ACCCCCAGCG AGACCGACGC GCTGATTCTG
GAAAATGATT ACATCAAGCA GTACATGCCC AGATACAATG TGCTGCTTCG AGACGATAAG
TCTTATCCCT ATATTTTCCT GAGCGGCCAT CGTCATCCAA GGCTCGCCTA TCACCGCGGG
CCTCAGCGGG AGAAGGGGCA CTATTTCGGT CCCTATCCCA ATGGCGGCGC GGTGCGCGAA
AGCCTGCATC TGATGCAGAA GCTGTTTCCT ATCAGACAAT GTGACGATCT TTACTATAAG
GCGCGCTCCC GCCCCTGTTT GCAGTATCAG ATCGCTCGCT GCAGCGCCCC CTGTGTGGGT
AAGATAAGCG ATGAAGATTA TGCCGAGCAG GTTAAGCTTG CCAGCCTGTT CCTGCGGGGC
AAGGATCAAC AGGTGATCGC CACCTTGGTG GGCAAGATGG AGCAGGCGGC TATGGACCTC
AATTATGAAG ATGCTGCCCG TTATCGTGAC CAGATCAGTG CGCTTCGCCG CGTCGCCGAG
CAACAGGAGG TGTCCAGCGA CTCTGGCGAC ATGGATGTGA TTGGCGCCTA CTATGCCTCG
GGCATCGCCT GTTTCCATCT GCTGTTTATT CGGAACGGCA AGATCTTCGG CAGTCGCAGC
TATTATCCTA GTGTGCCGGA CGAGACTGAG GTCAGCGAGG TGCTGCGCGC CTTCATGTTG
CAGTTTTATC TGAATGTCGA CAGTCAGCGC ACGCTGCCGA GAGAGATAGT GGTCAGCCAC
GAGTTTGAAG ATATCCATGA GTTGGAAGAG GCAATTGCCC AGGCCTCCAA TAGACGCCTG
CTGATCAAGA CCAAGGTGCG TAGCGAACGC GCCAGTTTCC TGCGTATCGC CGATGCTAAC
GCCAAGAATG CGGTAGAGAC ACGTTTGTCC CACCAAAATA CCGTCGAGGA GCGTTTCCTG
TTGCTAGAGG AGGCGCTGGA GCAGAGTCAG GCGATCAATC GCATGGAATG TTTCGATATC
AGCCATACCA TGGGGGAGAG CACTGTTGCC TCCTGTGTGG TGTTTAATCG CGAAGGACCG
AGCAAGGGTG AATATCGCCG CTATAATATC TCTGGGATCA CCCCGGGGGA CGATTATGCG
GCGATGAAAC AGGCGATCGG TCGCCGCTTC GATAAGATAG AGGCCGACGG CAAGATCCCC
GACATCCTCT TTATCGACGG CGGCATGGGA CAGCTGAGGA TTGCCCAGAA GGTGGTGAAC
GAGAAGTTTG CTCACCTGGA TGTGGCACCG ACGCTCATAG GTGTGGCAAA GGGGGAGGGG
CGTAAACCCG GACTCGAGAC TCTCATCTAT GGCGAGAACG AGGTGGCCTT TAGCTTACCG
GCAGATTCCG GCGCGCTGCA TCTGATCCAA CATATTCGCG ACGAGTCACA CCGTTTCGCG
ATAACTGGCC ACCGCAACAA ACGTCAGAAG ACCCGCAATA CCTCGACGCT CGAGTCTATC
CCTGGGGTGG GGCCTAAGCG TCGTAAGGCG TTGCTGCAAT ACTTAGGTGG TTTACAGCAG
GTTAAGGGGG CCAGCGTAGC GCAATTGTCT AAAGTGCCGG GCATTAGCCT AGAAATGGCA
CAAACAATAC ATGATGCGTT GCGAGGGTGA
 
Protein sequence
MTDSFNATQF LKTVSSSAGV YRMYDAQGVV IYVGKAKDLK KRLSSYFRRN LPNVKTQALV 
SHIANIDVTL TPSETDALIL ENDYIKQYMP RYNVLLRDDK SYPYIFLSGH RHPRLAYHRG
PQREKGHYFG PYPNGGAVRE SLHLMQKLFP IRQCDDLYYK ARSRPCLQYQ IARCSAPCVG
KISDEDYAEQ VKLASLFLRG KDQQVIATLV GKMEQAAMDL NYEDAARYRD QISALRRVAE
QQEVSSDSGD MDVIGAYYAS GIACFHLLFI RNGKIFGSRS YYPSVPDETE VSEVLRAFML
QFYLNVDSQR TLPREIVVSH EFEDIHELEE AIAQASNRRL LIKTKVRSER ASFLRIADAN
AKNAVETRLS HQNTVEERFL LLEEALEQSQ AINRMECFDI SHTMGESTVA SCVVFNREGP
SKGEYRRYNI SGITPGDDYA AMKQAIGRRF DKIEADGKIP DILFIDGGMG QLRIAQKVVN
EKFAHLDVAP TLIGVAKGEG RKPGLETLIY GENEVAFSLP ADSGALHLIQ HIRDESHRFA
ITGHRNKRQK TRNTSTLESI PGVGPKRRKA LLQYLGGLQQ VKGASVAQLS KVPGISLEMA
QTIHDALRG