| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1812 |
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| Symbol | rlmL |
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| ID | 4921704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2083035 |
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| End bp | 2085170 |
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| Gene Length | 2136 bp |
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| Protein Length | 711 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163377 |
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| Product | 23S rRNA m(2)G2445 methyltransferase |
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| Protein accession | YP_001093937 |
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| Protein GI | 127512740 |
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| COG category | [L] Replication, recombination and repair
[R] General function prediction only |
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| COG ID | [COG0116] Predicted N6-adenine-specific DNA methylase
[COG1092] Predicted SAM-dependent methyltransferases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0884579 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGAATT TTTTTGCCGC AGCCCCAAGA GGCTATGAGT ACGCCCTGTC GTTGGAACTG
GCAGAGTTTG GCGCCGCCGA GATAAAGGAA AGCGTTGCCG GTGTCTATTT CTCTGCGCCC
CTTAATCTGG CTTACCGTAT AACCCTATGG TCGCGACTCG CCAGCCGTAT CATTCTGGTG
ATCTACAAGG GGCCCTGTGA GAATCCCGAG CAGCTCTATA ATGCGGCCTA CTGCATCGAC
TGGCAGACCC ATTTCTCCAA TAAGAGCAGC TTCAGCATAG ATTTTCATGG TGTGGGTGGC
TTTATAAAGA ACTCACAGTT TGGCGCGCTT AAAATAAAAG ATGCGGTCGT CGACCGTTTT
CGTGACGATG GCTGTCCACG TCCCGATGTG GCCCGTGTCG ATGCTGACTT TAAGATAGAT
GCTCATTATC GCCGCGGCCA AATTACCCTG GGGATTAACT TCTCTGGGCC TGCTCTGCAT
CAGCGCGGTT ATCGCTCCAC CACGGGGGAG GCACCACTAA AGGAAAACCT GGCGGCCAAC
ATGTTGGTAC GTAGCGGCTG GCAACAGTCG CCGAAAGATC TACTCGACCC TTTCTGCGGA
AGTGGCACCA TTTTAATTGA GGCGGCTATG ATGGCCTGCG ATATCGCACC TGCGTTGCAG
CGTCGCCGTT TCGGTTTCGA GCACTGGCTA CGCCATCAAG AGGCCGACTG GCAGGAGCTG
CTTGCTGAGG CCAAGGCCCG CGCTTCTATC GGTACCAAGC GCTGTGAGAT CAAGTTTTAT
GGCTCGGATA TCGATTCGCG TCTGGTGGCG CTGGCAAAGC GTAACGCGCA AAACGCTGGC
GTTGCGGAGC TTATCGAGTT GTCGGTCTCC AACGCCCTCA ATGTTACGCC GCCGGTGGAG
CAGGGCTATC TGATCACCAA CCCGCCTTAT GGTGAGCGTC TGGGCAATGT CACTTCGCTG
TTGCAGCTCT ACTATCAATT GGGTGACAAG CTCAAGGCCG AATTTGGCGG CTGGCAGGTG
GCTGTGCTCA ACAGCGACAT CGAACTCCTC TCGGCCCTTA AGCTGAAAGC CGACAAGCAG
ATGAAGATGT ATAACGGCGC GCTCGAGTGT GCCTTTAACC TCTATACGCT GCATGCCAAC
AGCACCCGTC GTCTTGACCC TAGCCAGGTG TTGAGCCAGG GCGGTGAGGT GAGCGAGGTC
GCCACGGCCT TTAGTAACCG TATCAAGAAA AATCATAAGC AGCTGAGCAA ATGGGCTCAG
CGCGAGGGGA TAGATAGCTA TCGCCTCTAC GACGCTGATA TTCCCGAGTA CAATGTGGCG
GTAGATATCT ATCTGGATCA TGTGGTGATC CAGGAGTATT CGGCGCCTAA GTCGATTCCC
GAGGCGGTGA CTAAGCGTCG CCTGACAGAT GTCTTGCTGG TGTTGCCTCA GGCCATCGGC
GTCGACCCCG ATAAGATTAT TCTCAAGACT CGTGAGCGTC AGAAGGGTAC TAACCAATAC
CAGAAGCTAG ATGCCACTAA GCTCGAGCTG GTCACCACAG AGTACGGCGC CAAGTTTAAG
CTTAACTTGA AGGACTACCT GGATACAGGT CTCTTCTTAG ATCACAGACT GACCCGCAAG
CTAGTGGGTG AGAAGTCGAA AGGCAGAGAC GTGCTTAACC TGTTTGCCTA TACCGGCAGC
GCCTCGGTGC ACGCGGCTCT GGGGGGGGCC AAGTCGGTGA CTACGGTCGA TATGTCTAAC
ACCTATCTCA ACTGGGCGCA GGACAACTTC GAGTTGAATG GCCTTAAAGG CAAGCAGTAT
CAGTTTATTC AGGGCGATTG CTTGCAGTGG ATAGATGACT GCGACCAGCA GTATGACCTG
ATCTTCATCG ATCCACCGAC CTTCTCTAAC TCCAAGCGCA TGGAAGATTC TTTCGATGTG
CAGCGCGACC ACGTGAAGCT GTTGAGCGCG CTGGTGAAGC TGCTGCGTCC GGGCGGGGAG
ATACTGTTCT CCAACAACAA GCGTAAATTT AAGATGGATA GCGAGGCGCT CAGTGCCCTT
GGCTTGTCGA TCACTAACCT GGATAAGCAG ACGCTGCCGC TGGATTACAA GCGTAATCCG
CATATTCATA ACACCTGGTT GATTCAGCAT GCCTAA
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| Protein sequence | MLNFFAAAPR GYEYALSLEL AEFGAAEIKE SVAGVYFSAP LNLAYRITLW SRLASRIILV
IYKGPCENPE QLYNAAYCID WQTHFSNKSS FSIDFHGVGG FIKNSQFGAL KIKDAVVDRF
RDDGCPRPDV ARVDADFKID AHYRRGQITL GINFSGPALH QRGYRSTTGE APLKENLAAN
MLVRSGWQQS PKDLLDPFCG SGTILIEAAM MACDIAPALQ RRRFGFEHWL RHQEADWQEL
LAEAKARASI GTKRCEIKFY GSDIDSRLVA LAKRNAQNAG VAELIELSVS NALNVTPPVE
QGYLITNPPY GERLGNVTSL LQLYYQLGDK LKAEFGGWQV AVLNSDIELL SALKLKADKQ
MKMYNGALEC AFNLYTLHAN STRRLDPSQV LSQGGEVSEV ATAFSNRIKK NHKQLSKWAQ
REGIDSYRLY DADIPEYNVA VDIYLDHVVI QEYSAPKSIP EAVTKRRLTD VLLVLPQAIG
VDPDKIILKT RERQKGTNQY QKLDATKLEL VTTEYGAKFK LNLKDYLDTG LFLDHRLTRK
LVGEKSKGRD VLNLFAYTGS ASVHAALGGA KSVTTVDMSN TYLNWAQDNF ELNGLKGKQY
QFIQGDCLQW IDDCDQQYDL IFIDPPTFSN SKRMEDSFDV QRDHVKLLSA LVKLLRPGGE
ILFSNNKRKF KMDSEALSAL GLSITNLDKQ TLPLDYKRNP HIHNTWLIQH A
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