| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1802 |
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| Symbol | |
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| ID | 4924295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2062300 |
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| End bp | 2064345 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163363 |
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| Product | carboxy-terminal protease |
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| Protein accession | YP_001093927 |
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| Protein GI | 127512730 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0793] Periplasmic protease |
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| TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.308146 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAAAAC TCACTCTGGC AGCATCCATT GCCAGCATCT TTGTAGGATT CTCGGCATGG
GCGCTGACGC CCAGTATTCC ATCTAGCGAG TTGCCCTCTC TAACGCAAGA GCCGCAACAT
AAAGTAGCGA GTAAGCGAGT GACGGGTCTG TTCACTCGCG CCCATTATCA TAGATTCGAT
CTGGACGACG CCTTCTCAGA GCAGGTGTTC GACCGCTATC TTAAGCAGCT CGATTATCGC
CGCAATGTCT TGCTTCAGAG TGATATCGAC AGTTTCAAGC CCTATGCGAC CCAATTCGAC
GACATGTTGA AGAGTGGCGA TCTCACTGCC GCCTACAAGA TGTTCGATCT GGTGCAGCAG
CGCCGCTATG ACCGTTTTGC CTACGCCTTA TCCCTGCTCG ACAAGGAGAT GGACTTCAAT
GTCCCCGGCG ACAGCTATCA ATACGATAGA GACGATGCGG CCTGGCCAAA AGATGAAGCC
GAGCTCAACG AGCTGTGGCG TCAACGGGTC AAGTACGATG CGTTAAACCT CAAGCTGACC
GGTAAGAACT GGGATGAAAT TGTTAAGGTG CTCGATAAGC GTTACAACAA TGCCATCAAG
CGTTTGAGCC AGACCAAGAG TGAAGATGTC TTCCAGGGTG TGATGAACGC CTTCTCTCGC
AGCGTCGAGC CACACACCAG CTACCTGTCG CCGCGCAACG CGGAGCGTTT CCAGATGGAG
ATGAACCTGA GCCTTGAGGG GATAGGCGCC GTGTTGCAGA TGGATGATGA CTACACAGTG
ATCAAGAGCC TGGTTGCTGG CGGCCCTGCG GCCAACAGCG AAAAGCTGGC ACCGGAAGAT
CGCATCGTGG GTGTCGGCCA GGAAGGTAAA GAGATTGTCG ATGTGATCGG CTGGCGACTA
GATGACGTGG TCGAGCTGAT CAAGGGGCCT AAGGGCAGTA AGGTTGTGCT GCAGATCCTG
CCTAAGAAGG GCGGCTCTTC TGCCAAACCG ATCGACGTGA CCATAGTGCG TGACAAGATC
CGCCTAGAAG ATCGCGCCGC GACCTCTGAG GTGATCGAGC CGGAAACCGG TGATTATGCC
GGCCGCAAGG TTGGGGTGAT TAAGATCCCT GGTTTCTATA TGAACCTGTC TCAGGATGTC
ACCAAAGAGT TGGTGAAGCT CAAAGACGCC AAGGTTGAAG GTGTGGTTAT CGACCTTAGA
GGTAATGGTG GCGGCGCATT AACCGAAGCG ACACTGCTTA CCGGACTGTT TATCGAGCAG
GGCCCTGTGG TGCAGATCCG CGATGCTAAC GGTAAGGTGT CGCAAAACCG CGACAACGAC
GGCCGTGTGA CCTATTCTGG ACCGCTCACC GTGATGGTGG ATCGTTACAG TGCCTCGGCA
TCTGAGATCT TCGCCGCCGC ACTGCAAGAC TATGATCGCG CACTTATCGT GGGTGAGTCG
ACCTTTGGTA AGGGCACAGT GCAGCAGCAT AAGAGCCTGG GCCGTATCTA TGATATGTAC
GACAAGCCTA TCGGCCATGT GCAATACACC ATCGCCAAGT TCTACCGCAT CAATGGCGGT
AGCACCCAGC TTAAGGGCGT GACGCCGGAC ATTCCATTCC CAAGTGCCCT AGAGCCGGGT
GAATACGGCG AAGCCGAGGA AGCCAACGCA CTGCCTTGGG ATAAAGTGCC AGTGGCTCAG
TACGGTACGC TTGGGGATAT CACTCCAGAG CTAGTGACTA ATCTCGATTC GCGTCACCAG
CAACGTATCA AGAAAGACGT TGAATTTGGC TATATCGATC AAGATATTGC CGAGTTCAAG
AAGAGTCACA AAGAAACCAG CGTCTCTTTG GTCGAAAAAG AGCGTGTGGC CGAGCGTGAA
GCCAACGATG AGAAGCAACT TGCGCGTCTC AACGAACGCC GTGCAGTGGA TGGACTCGAA
GCACTTAAGT CTCTGGATGA CGCCGAAGAA GATGTGAAGG CGCCGGATGC ATTTCTCGAC
GAGACAGTCT ATATCACACT GGATCTAGTG GATATGGAAA GAGTGGCTAA AAACCAGGCG
AAATAA
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| Protein sequence | MRKLTLAASI ASIFVGFSAW ALTPSIPSSE LPSLTQEPQH KVASKRVTGL FTRAHYHRFD
LDDAFSEQVF DRYLKQLDYR RNVLLQSDID SFKPYATQFD DMLKSGDLTA AYKMFDLVQQ
RRYDRFAYAL SLLDKEMDFN VPGDSYQYDR DDAAWPKDEA ELNELWRQRV KYDALNLKLT
GKNWDEIVKV LDKRYNNAIK RLSQTKSEDV FQGVMNAFSR SVEPHTSYLS PRNAERFQME
MNLSLEGIGA VLQMDDDYTV IKSLVAGGPA ANSEKLAPED RIVGVGQEGK EIVDVIGWRL
DDVVELIKGP KGSKVVLQIL PKKGGSSAKP IDVTIVRDKI RLEDRAATSE VIEPETGDYA
GRKVGVIKIP GFYMNLSQDV TKELVKLKDA KVEGVVIDLR GNGGGALTEA TLLTGLFIEQ
GPVVQIRDAN GKVSQNRDND GRVTYSGPLT VMVDRYSASA SEIFAAALQD YDRALIVGES
TFGKGTVQQH KSLGRIYDMY DKPIGHVQYT IAKFYRINGG STQLKGVTPD IPFPSALEPG
EYGEAEEANA LPWDKVPVAQ YGTLGDITPE LVTNLDSRHQ QRIKKDVEFG YIDQDIAEFK
KSHKETSVSL VEKERVAERE ANDEKQLARL NERRAVDGLE ALKSLDDAEE DVKAPDAFLD
ETVYITLDLV DMERVAKNQA K
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