| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1685 |
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| Symbol | |
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| ID | 4920448 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1935281 |
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| End bp | 1938187 |
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| Gene Length | 2907 bp |
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| Protein Length | 968 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163247 |
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| Product | collagenase |
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| Protein accession | YP_001093811 |
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| Protein GI | 127512614 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000629981 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000468189 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGACAACCA ATATGACAAA TAAAACATTA GGCGGCGCTC GCCGCTTCAC CCCAACCGCG
CTGGCCTTGG CCTGCTCGCT ACTGGCCACC CCGCTGGTGC TGCACGCTCA AGATGTTCAG
CCACAAGGCA TGCCGGCAAA GGATGTAAAG GGCCCGCTTT CGATAAAAGC CGCACCGTCG
ACAAAAGCCG CGCCGCCGAC GAAAGCCGCA CCTGCCCAGA AGGTGAAGCC GTCTGCCGAC
AAGGCCGCTG CGAGTTCTCG ATTCGACACG TCTGCGCGCA AGCCCATAGG GGCACGTGAT
GCGGAGCAGG GCGAAGGCGT GAGGCCTGAG AAGCGTGATA GCAAATTGGA GAAGGGGAGT
AAGGGGCAAT CGGCGCTGCC AGGCATGAAG GGCAATCAAG GCGCGACCGG GCCTGCGGCC
GAGGCGGATG CCTGTAATGG TTACAGCCAG TTCGACAGCT TGAGTGGTCA GGCGCTGTAC
GATTTTGTTC GCCAGGCGGA GTTTTCCTGT ATCTCCGAGC TCTATTCTCA CAACGATGCC
ACCGCGGTCA AGGTGTATCA GGCCGACAAT GTGGTGGCCG TGGCGAATCT GGCCAAGGCA
ACGGCTGCAA GTTACGATAG CAGCACCGGC GGCGAGCTGT TTAACCTGTT CTACTTCCTG
CGAGGCGCCT TCTACATAGA GTATTACAAC GATGATCTCA GCTATGGTGA CAGCCGCGCC
AGCGATGCCA TGCGTGAGCT GCTACTGGAA TATGCCAAGA ACCCGGCCTT TAACAGCCTG
AGCGACATGC AGGGCAACAC ACTGCAGGAA TATTTCATCG CCTGGGACAG CTCCTACAAC
TACTATGATT CGGTGGCCGT GATCACCGAT TATCTGAATC AGTTTAGCGA GCAGCATCTG
GCCTCCTGGT ACCACAGAAG CGCGCTGACC AAGGCGCTCA CCACCCTGTA TCGCGGCAAC
TGGGATGAAA AATATACCAA GGCGTCGATG GAGTATGATG CCCTGCGCGC CGCCTTGCTC
AAGGTGGCGA CCTCGGACTA CATCATCAAC TCAGAGTATG CTTTCGAGTC CACGGATGCC
TTTCACGAGT TTGGACGTTT CTACGAGTAT CAGGCCTACT GGAAACTACC GGATAGCCTG
AAAACGGCCC TCAACGGCGG CGTGCAGCAA TATATGGCCA AGTTTAACCG TCTGTCTAAG
CAGTGGGTGG ATGCGGCCGG TTATCTGGAT TACTACAACC CTGGCCAGTG CGACAGCTTC
GGCATCTGCG GCTGGGAGGA TGAGGTGGAA GCCAGTGTGC TTGCTATTCA CTACAGCTGC
TCGGACACCA TCAAGATCCG CGCTCAGCAG CTGACGGATC AGGAGCTGCA GGCCTCTTGC
GAGCTCATGG GTGAGGAAGA GGGGCTGTTC CATCAGATCC TGGCGACCGG CGGCGAGCCA
GTGGCGGACG ACTACAACGA AGATCTGCAG GTCAATATCT TCGATAGCTA TGACGACTAT
GATGTCTACG CCGGCATCAT CTTCGGCATC AACACTGACA ACGGCGGCAT GTACCTGGAA
GGCACGCCGT CGGATCCCGA CAACCAGGCA CGTTTTATCG CCCACGAGGC CACTTGGACC
GACGACATCT TGGTGTGGAA CCTGAGACAC GAATATGTGC ACTACCTGGA TGGTCGCTTC
AATCTTTACG GCGCCTTTAA CTACTTCGAT GTCGACACGG GTAAGTCTGT GTGGTGGGCC
GAGGGCCTCG CCGAATACAT CTCCCATCAG AATCGCTACG ATGAGGCGAT CGATATCGGC
CGCAGCCAAG AATTTAGCCT GAGCGAGATC TTGTCTAACA CCTATGACAG CGGTACCGAC
AGGGTCTATC GCTGGGGCTA TCTGGCGGTG CGCTTCTTGT TCGAGCAGCA CAGAAGCGAT
GTGGACGCTT TGTTAGTTCA CGCCCGCGCC GGTGATACCT CGGCCTGGCT CAGCTATATC
GACAACACTA TCGGCACGAA CTATGACGCA GAGTGGAACA GCTGGCTGCT GACGGTGACT
AGTAACGATA CGCTGCTCGA CGGTGGCATA GTGACCCCGG TCGACAGCGA TGGTGACGGG
GTGATCGACA GCGAAGATGC CTTCCCCAAC GATCCGACCG AGTGGGCGGA TGAGAATGGT
AACGGTATCG GCGATAACGC CGATGCGGCC AATGGTGGTG GGCAGACGGG GAACTGCGGC
GCCGCAACCA TCAGCGACGG CAATATTACC CAGGAGCAGG CCGAGTGTGT GGCAGGCACA
GGGGTGAACT ACTACTATAC CTATGTCGAG CAGGATAATA CTCAGCTCTA TATCAGCACC
ACGGGCGGTG AGGGCGATCT GGATATCTAC TTTAACCAGC AGACCTGGGC GAGCCCGAGC
GACTATGAGG TGAAGTCGCA AAACAGCGGC AACGAGGAGC TGATCAGCGT GGTCGCCAAT
CGTGGTTGGG TCTATCTCTC GACGGTAGCC GTGACGCCAT TTGAGGGCGT TAGCCTCAAG
ATCAGCCAGA GCGCCGACAC TACGCCGGAT AACGGTTCGC CTCAGGTGGC GGATGCCTGC
CTAAGCCAAA GCCCTTATAG TTATGGCGGG GTAGAGTTTG GTCAGGCGGT GTGTGTGGAC
GACGGCCATT CCAGCTATTA CTTCTATGTG CCGGCCAATA CGGCGGCTAT CGAGATCAAC
ACGGCCCATG GTAGCGGCGA TCTGAACCTC TACGCCAACG CAACGACCTG GGCGAGCCCG
ACGGCTTATC AGTTCAAGTC GGAAAACGTC GGCAACAGCG AGCAGATCCG CGTCGTTTCA
CCTGCCGAAG GCTGGTTCTA TGTCAGCGCC GATGGAGCGC CCTCAAGCAG TGGCGCCAGT
TTGCTGGTTA CCCTGGCTAG CAACTAA
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| Protein sequence | MTTNMTNKTL GGARRFTPTA LALACSLLAT PLVLHAQDVQ PQGMPAKDVK GPLSIKAAPS
TKAAPPTKAA PAQKVKPSAD KAAASSRFDT SARKPIGARD AEQGEGVRPE KRDSKLEKGS
KGQSALPGMK GNQGATGPAA EADACNGYSQ FDSLSGQALY DFVRQAEFSC ISELYSHNDA
TAVKVYQADN VVAVANLAKA TAASYDSSTG GELFNLFYFL RGAFYIEYYN DDLSYGDSRA
SDAMRELLLE YAKNPAFNSL SDMQGNTLQE YFIAWDSSYN YYDSVAVITD YLNQFSEQHL
ASWYHRSALT KALTTLYRGN WDEKYTKASM EYDALRAALL KVATSDYIIN SEYAFESTDA
FHEFGRFYEY QAYWKLPDSL KTALNGGVQQ YMAKFNRLSK QWVDAAGYLD YYNPGQCDSF
GICGWEDEVE ASVLAIHYSC SDTIKIRAQQ LTDQELQASC ELMGEEEGLF HQILATGGEP
VADDYNEDLQ VNIFDSYDDY DVYAGIIFGI NTDNGGMYLE GTPSDPDNQA RFIAHEATWT
DDILVWNLRH EYVHYLDGRF NLYGAFNYFD VDTGKSVWWA EGLAEYISHQ NRYDEAIDIG
RSQEFSLSEI LSNTYDSGTD RVYRWGYLAV RFLFEQHRSD VDALLVHARA GDTSAWLSYI
DNTIGTNYDA EWNSWLLTVT SNDTLLDGGI VTPVDSDGDG VIDSEDAFPN DPTEWADENG
NGIGDNADAA NGGGQTGNCG AATISDGNIT QEQAECVAGT GVNYYYTYVE QDNTQLYIST
TGGEGDLDIY FNQQTWASPS DYEVKSQNSG NEELISVVAN RGWVYLSTVA VTPFEGVSLK
ISQSADTTPD NGSPQVADAC LSQSPYSYGG VEFGQAVCVD DGHSSYYFYV PANTAAIEIN
TAHGSGDLNL YANATTWASP TAYQFKSENV GNSEQIRVVS PAEGWFYVSA DGAPSSSGAS
LLVTLASN
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