| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1684 |
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| Symbol | |
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| ID | 4920454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1934337 |
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| End bp | 1934933 |
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| Gene Length | 597 bp |
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| Protein Length | 198 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640163246 |
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| Product | lysine exporter protein LysE/YggA |
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| Protein accession | YP_001093810 |
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| Protein GI | 127512613 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1280] Putative threonine efflux protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00116285 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000017661 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGGAACTGG TTTTCGCCAT CGCCCTATTT GCCTTTTCCT CGGGGATCAC CCCCGGGCCC
AACAACATCA TGTTGATGAC CTCTGGGGTA AACTTTGGCA TCCGCCTGAG CCTGCCCCAT
CTGGCGGGGA TCTGTATCGG CTTTCCCTGC ATGGTACTGG CGATAGGTCT TGGGCTGAGC
GCCGTGTTTC AGGCCTATCC CCTGCTGCAC CTTATCATCA AGTATGTCGG CATCGCTTAC
CTGCTCTACC TGGCCTGGTT GATCGCCAAC AGCAGCAGCC GCATGGAGGG CAAACAGACG
GCAAAGCCTC TCTCCTTCGT GCAGGCCGCG GCCTTTCAGT GGGTCAACCC TAAGGGCTGG
ATCATGGCCG TCGGCGCCAT TGCCACCTTT ACCGTGATGG ACAAGCCGCT GACGCCTCAG
GTGCTCACCA TCGCCAGCGT CTTCTTCAGC GTCGCCCTGC CCTGCGCCCT GGTGTGGCTC
GGCTTCGGCG TGGCGCTCAA GCGGCTACTT AAGCATCAAG GGCAGCAAAA AGCCTTTAAC
ATCGCCATGG CGCTCTTGCT TGTGGCCTCT ATCATCCCTA TGATCGCTCC TCAATAA
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| Protein sequence | MELVFAIALF AFSSGITPGP NNIMLMTSGV NFGIRLSLPH LAGICIGFPC MVLAIGLGLS
AVFQAYPLLH LIIKYVGIAY LLYLAWLIAN SSSRMEGKQT AKPLSFVQAA AFQWVNPKGW
IMAVGAIATF TVMDKPLTPQ VLTIASVFFS VALPCALVWL GFGVALKRLL KHQGQQKAFN
IAMALLLVAS IIPMIAPQ
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