| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1679 |
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| Symbol | |
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| ID | 4920483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1930027 |
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| End bp | 1930584 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163241 |
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| Product | TetR family transcriptional regulator |
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| Protein accession | YP_001093805 |
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| Protein GI | 127512608 |
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| COG category | [K] Transcription |
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| COG ID | [COG1309] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000226335 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGACAGATA AGAGACAGTT ACTAATCGAT ACCGCCCTCT CCCTCTTTAC CGAGCGGGGC
ATCAATCTTG TGGGGATCAA CGAGGTGCTT AAGGTCTCCG GAGTCGCCAA GAAGACCCTG
TATCATCACT TCAGCAGTAA GGAAGCCCTG ATAGTGGCGG TGCTCGAAAC CCGTCACCAG
ATCTTCATCC ACTGGCTGGA GGAGCGCCTT ACGCCAGCTC AGGACGATCT CGGCGTGATC
GATGCACTGT TTAGCGCGCT GGATGACTGG TTTAACGACC GGGTACCCGA GCTGAGTCAG
TTTCACGGCT GCCTGTTTAT CAACTCCGCC ATCGAATGTG GCGACTGCCG CTGTCAGGTA
TCGCGCTTCG CCAAGTTCCA TAAACAGGCG GTTCGAGACT TGATTGGCAA GCACCTCCAT
CAGCCAAATG AAGCCCTGGT AGACCTTATC TGCCTGATGA AAGAAGGTGC CATCGTTTCG
GCCATGGTGA GCCAGGATAA AGGCGCCGCC CTTCGCAGCC AGAGCCTGCT GCAACATCTT
GCACCCAGCC TCATCTAA
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| Protein sequence | MTDKRQLLID TALSLFTERG INLVGINEVL KVSGVAKKTL YHHFSSKEAL IVAVLETRHQ
IFIHWLEERL TPAQDDLGVI DALFSALDDW FNDRVPELSQ FHGCLFINSA IECGDCRCQV
SRFAKFHKQA VRDLIGKHLH QPNEALVDLI CLMKEGAIVS AMVSQDKGAA LRSQSLLQHL
APSLI
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