| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1676 |
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| Symbol | |
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| ID | 4920498 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1926354 |
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| End bp | 1927949 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640163238 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001093802 |
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| Protein GI | 127512605 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.762171 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000352126 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | TTGATCACGA CAGCTAACAT CACCATGCAG TTTGGCTCTA AGCCGCTGTT TGAAAACATC
TCAGTAAAAT TCGGCGGCGG TAACCGTTAC GGCCTTATCG GTGCCAACGG TTGTGGTAAA
TCAACCTTCA TGAAGATCCT TGGCGGCGAA CTCGAGCCAA CATCGGGCAA CGTCTCTCTG
GATGTGAACG AGCGTCTGGG TAAGCTGAGC CAGAACCAGT TTGGTTACGA AGAGTTTAAC
GTGGTCGATA CCGTGATCAT GGGCCACACC GAGCTGTGGA AGGTGAAACA AGAGCGTGAC
CGCATCTATT CGCTACCTGA GATGAGCGAA GAAGATGGCA TCAAGGTGGC CGAGCTGGAG
ATGGAATTTG CCGAGATGGA CGGTTACACC GCAGAAAGCC GCGCCGGCGA ACTGCTGCTG
GGTGTGGGCA TTCCACTGGA GCAACACTTC GGCCTGATGA GCGAAATCGC TCCAGGTTTC
AAGCTGCGTG TGCTGCTGGC CCAGGCGCTA TTTAGCGATC CCGATGTACT GCTGCTCGAC
GAACCCACCA ACAACTTGGA TATCGACACC ATCCGCTGGC TGCAAGAGAT GCTTAACCAG
CGTAACAGCA CAATGATCAT CATCTCGCAC GACAGATACT TCCTCAACTC TGTCTGTACC
CATATGGCGG ATCTCGACTA TGGTGAGCTG CGTGTTTATC CGGGTAACTA TGATGAATAC
ATGACGGCAG CGAGCCAGGC GCGCGAGCGT TTACTGTCTG ATAACGCTAA GAAGAAGGCG
CAGATCGCCG AGCTACAAGG CTTCGTGGCG CGCTTCTCGG CCAACGCCTC TAAGGCGAAG
CAGGCGACCT CTCGTGCCAA GCAGATCGAG AAGATCAAGC TGGAAGAGGT TAAGGCCTCA
AGCCGCGTCA ACCCCTTCAT CCGTTTCGAG CAGGAGAAGA AGCTGTTCCG TAACGCCTTG
GTGGTTGAGG AGCTGTCTAA GGGTTATGAC GACGGTCCAC TGTTCAAAGA CTTTAACCTG
ATTGCCGAAG TGGGCGAGCG CATCGCGGTA CTGGGTGAGA ACGGTGTGGG TAAGACCACC
ATGCTGCGTA CCCTGATCCA CGATATCCCG CAAGATACAG GTACTATCCA GTGGTCTGAA
AACTCGGCTA TCGGTTACTA CGCGCAGGAT CATGAATCAG ATTTCGAAAA CGACATGACA
CTGTTTGATT GGATGAGTCA GTGGCGTAAA CCTGAAGATG ACGATCAGAG CGTACGTGGC
TACCTCGGTC GTATGCTGTT TAGCTCAGAC GATATTAAGA AGTCGGTACG CGTACTCTCA
GGTGGTGAGA AGGGCCGTAT GCTGTTTGGT AAGCTGATCA TGCAAAAGCC AAACATTTTG
GTGATGGATG AGCCGACCAA CCACTTGGAT ATGGAATCCA TTGAGTCGCT CAACAATGCG
CTGGAGATGT ATGAAGGCAC CTTGATCTTC GTCAGTCACG ACCGCGCCTT CGTATCGTCG
CTGGCCACCC GCATCATAGA GATCACCCCA CAGGGCGTGA ATGACTTCAA GGGTACTTAT
GATGAATTCC TGCGCAGCAA AGGCGTAGAA GAATAA
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| Protein sequence | MITTANITMQ FGSKPLFENI SVKFGGGNRY GLIGANGCGK STFMKILGGE LEPTSGNVSL
DVNERLGKLS QNQFGYEEFN VVDTVIMGHT ELWKVKQERD RIYSLPEMSE EDGIKVAELE
MEFAEMDGYT AESRAGELLL GVGIPLEQHF GLMSEIAPGF KLRVLLAQAL FSDPDVLLLD
EPTNNLDIDT IRWLQEMLNQ RNSTMIIISH DRYFLNSVCT HMADLDYGEL RVYPGNYDEY
MTAASQARER LLSDNAKKKA QIAELQGFVA RFSANASKAK QATSRAKQIE KIKLEEVKAS
SRVNPFIRFE QEKKLFRNAL VVEELSKGYD DGPLFKDFNL IAEVGERIAV LGENGVGKTT
MLRTLIHDIP QDTGTIQWSE NSAIGYYAQD HESDFENDMT LFDWMSQWRK PEDDDQSVRG
YLGRMLFSSD DIKKSVRVLS GGEKGRMLFG KLIMQKPNIL VMDEPTNHLD MESIESLNNA
LEMYEGTLIF VSHDRAFVSS LATRIIEITP QGVNDFKGTY DEFLRSKGVE E
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