Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1632 |
Symbol | |
ID | 4922100 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1867128 |
End bp | 1868360 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640163194 |
Product | LolC/E family lipoprotein releasing system, transmembrane protein |
Protein accession | YP_001093758 |
Protein GI | 127512561 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000222973 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.613387 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTTAG CGTTATCTTG GACCATAGGT TATCGGTACT GGCGAGCACG TAAGGCCAAT CCATTTGCCT CATTTATTAC CCTGTTTGCC GTGTCGGGGA TCTTGCTCGG GGTTGCGGCC CTGATCATAG TTAGTTCTGT GATGAATGGT CTCGAGGGAC AGCTCAAGCA GCGCATTCTC GGCGCAGTGC CGCAGCTGAC GGTGCACTGT GAGCAGCACC TTGGCCACTG GCAAGATGTC GCCAATACCT TAATCGATGG TAAGCAGATC CTGGCGATGA GCCCGAGCGT GGCCACCCAG GCCATGTTAC AGTCGCCGAG CAACATCAGT GCGGTGCAGG TTTATGGTAT CTATCCCGAG CTTGAAAAAG ACAATCTGTC CCGTCTGAAC CGTCACTTCA ATGGCTCCCT CGATAGTCTC GAGGCGGGCA AATACCGCAT CATCATTGGC GCCGAGTTGG CGCGTCGTCT GGATGTGAAA CCCGGCGATA AGATACGTGT ACTCAGTGGC GATGGGGTAG TCTATTCGCC GCTGGGGCCT GTGCCGAGTC AGCGTAAGTT TATCGTAGCC GGCGTGTTTG AGATGGGATC TCAGGTAGAT GCGAGCCTGG CTTACGTGCA TCACGAGGAT GCACTGCGTC TGATGCGCAA GTCCCCCAAT GAGATCAAGT CGCTGCGCCT CTATCTGGCC GATCCCTTCA AGGCGAGCAA GTTGGCTTCT AAGGTTAAAG CCGCGTTTGA GGCGGCCGGT GACAGTGTGA CCACCAGTGA TTGGCGCGAA AACTATGGTC ATCTCTTCTC TGCGGTAAAG ATGGAGAAGA ACATGATGTC GTTGATGCTC AGCCTGATCA TCGCCGTGGC GGCCTTTAAC ATCGTCTCGG CGCTGGTGAT GATGGTGGTG GATAAGACCA CAGACGTTGC CGTGCTCAAG ACCCAAGGCC TGACCACGGG TAGCATCATG GGGATCTTCA TGATCCAGGG CTCGCTCAAC GCCGTCTTAG GCCTGGTGGG CGGCCTGGCT ATCGGCGTGC TGGCCACATT AAATATCAAT ACACTCTTCT CAATGCTCGG CATTCATGTG CTCGGGGCGG GGCAACGTCT GCCGGTGCAG CTCGAGTGGG GCCAGTTGTC CCTGATCGTC GTTGGCACCC TGGCCATCAC ATTTTTAGCG ACCGTTTATC CCGCACTACG GGCAGCAAGC GTGCAACCTG CCACAGCTTT AAGGTATGAA TAA
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Protein sequence | MNLALSWTIG YRYWRARKAN PFASFITLFA VSGILLGVAA LIIVSSVMNG LEGQLKQRIL GAVPQLTVHC EQHLGHWQDV ANTLIDGKQI LAMSPSVATQ AMLQSPSNIS AVQVYGIYPE LEKDNLSRLN RHFNGSLDSL EAGKYRIIIG AELARRLDVK PGDKIRVLSG DGVVYSPLGP VPSQRKFIVA GVFEMGSQVD ASLAYVHHED ALRLMRKSPN EIKSLRLYLA DPFKASKLAS KVKAAFEAAG DSVTTSDWRE NYGHLFSAVK MEKNMMSLML SLIIAVAAFN IVSALVMMVV DKTTDVAVLK TQGLTTGSIM GIFMIQGSLN AVLGLVGGLA IGVLATLNIN TLFSMLGIHV LGAGQRLPVQ LEWGQLSLIV VGTLAITFLA TVYPALRAAS VQPATALRYE
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