Gene Shew_1622 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1622 
Symbol 
ID4921539 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1854926 
End bp1855582 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content57% 
IMG OID640163184 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionYP_001093748 
Protein GI127512551 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.13615 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.054118 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGAACT TAAGTGATAT TAGACGAGAA TACACCCTGG GCGGGCTGCA CCGAGAGGAG 
CTGCCCGACA ACCCCATGGT GCTGTTTGAG AAATGGATAG AGCAGATTAG GGATTCGGAG
ATCCTGCCGG ATCCCACGGC CATGTCGGTG GCAACCGTCG ATGCCGAGGG GCAGCCGTTT
CAGCGTATCG TGCTCTTAAA ACGTTTCGAT GACAACGGCT TTGTGTTTTT CACTAACCTG
GCCAGTCGCA AGGCGGAGCA GATAGCCCAC AACAACAAGG TGAGTCTGCT GTTTCCCTGG
CACGCCCTGG AGCGTCAGGT GGCGGTGACG GGTGTGGCGG AGCAGCTTTC GACCACTGAG
GTGCTTAAGT ACTTCGTGAC GCGGCCCAAA GAGAGTCAGA TCGCCGCCTG GGTGTCGAAG
CAATCGAGCA AGATCTCGGC GCGCCAAGCG CTGGAGAGCA AGTTTGCCGA GATGAAGGCC
AAGTTCAGCC AGGGTGAGGT GCCGCTGCCT AAGTTTTGGG GTGGTTACCG GGTGCGTCCT
AGCAGCATAG AGTTCTGGCA GGGCGGTGAA TATCGCCTGC ACGATCGCTT CCTCTACAGC
CGTAAAGATT CAAGTCTTAA AGAAGGCGGC TGGGATATCG ACCGCCTGGC GCCTTAA
 
Protein sequence
MSNLSDIRRE YTLGGLHREE LPDNPMVLFE KWIEQIRDSE ILPDPTAMSV ATVDAEGQPF 
QRIVLLKRFD DNGFVFFTNL ASRKAEQIAH NNKVSLLFPW HALERQVAVT GVAEQLSTTE
VLKYFVTRPK ESQIAAWVSK QSSKISARQA LESKFAEMKA KFSQGEVPLP KFWGGYRVRP
SSIEFWQGGE YRLHDRFLYS RKDSSLKEGG WDIDRLAP