| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1619 |
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| Symbol | |
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| ID | 4922250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1850856 |
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| End bp | 1852769 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163181 |
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| Product | arginine decarboxylase |
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| Protein accession | YP_001093745 |
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| Protein GI | 127512548 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
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| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000092888 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0751508 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAATT GGTCTATTAA AGATGCTTAT GTTGGTTATA ACGTTAATTA CTGGAGCTCT
GGGCTCTACG GCATAAGCGA GGCCGGTGAG GTGACGGTGT CCCCCGATCC TAATCATCCT
GAGCACACTA TAGGGTTAAA TGAACTCGCT AAGGATATGG TGAAATCCGG CGTGGCCTTG
CCTGTGTTGG TGCGCTTCCC GCAGATCTTG CATCACAGAG TCAACAGCTT GTGTAACGCC
TTCAATCAGG CGATCACCCG TTATGACTAT CAGTCAGACT ATCTGCTTGT CTACCCCATC
AAGGTGAACC AACAGCAAAC TGTGGTCGAA GAGATCCTAG CAAGTCAGGT GTCTAAAGAG
GTACCACAGC TGGGTCTTGA GGCCGGCAGT AAGCCTGAGC TGATGGCGGT ACTCGCCATG
GCGCAGAAGG CCAGCTCGGT GATCATCTGT AACGGCTACA AAGATGTGGA ATATATCCGC
CTGGCGCTGA TCGGCGAGAA GCTCGGCCAT CAGGTCTATA TCGTGCTCGA GAAGCTGTCT
GAGCTGAAAG TCGTCCTCGA AGAAGCCAAG AAACTGGGGG TGACCCCGCG TCTGGGTCTG
CGCGTGCGTC TAGCCTTTCA GGGTAAGGGC AAGTGGCAAG CCAGCGGCGG CGAGAAGTCT
AAGTTTGGTC TGTCTGCGGC TCAGGTGCTG AACGTGATCA ACTCACTGAA AGACGAAGAC
ATGCTCGACA GCCTACAGCT GCTGCACTTC CACCTGGGAT CGCAAATCGC CAACATCCGC
GATATCCGCA GCGGTGTGAG CGAGGCGGGC CGTTTCTACT GTGAACTGCA GAAGATGGGC
GCCAACGTTA AATGTTTCGA CGTGGGTGGT GGCCTGGCGG TGGACTATGA CGGTACCCGT
AGCCAGAGCA GCAACTCGAT GAACTATGGC CTGACGGAAT ACGCCAACAA CATCGTCAGC
GTGCTGAACG ACATGTGTCG CGAACACGAT CAGCCAATGC CGCGTCTGAT CTCTGAGTCT
GGTCGTTACC TGACGGCTCA CCACGCAGTG TTGATCACCG ACGTGATTGG CACAGAGGCC
TATAAGCCTG AAGATCTGCA AGCGCCGGAT GAAGAAGCGC CGCAGCAGCT CAAAAACATG
TGGGATTCAT GGGGTGAGGT GAGTGGCCGC GCTGATCAAC GCGCCCTTAT CGAGATCTAC
CACGATGTGC AAAGCGACCT GGCCGAGGTG CACTCGCTGT TTGCCCTAGG GCAGATGAGC
CTGTCCGACA GAGCCTGGGC AGAGCAGATG AACCTGCGTG TCTGTTACGA GCTGAAGGGT
GTGATGAGCG GTAAGTATCG TTTCCACCGC CCGGTGATCG ATGAGCTTAA CGAGAAGCTG
GCGGACAAGT TCTTCGTGAA CTTCTCGCTG TTCCAATCGC TGCCAGATGC CTGGGGTATC
GATCAGGTGT TCCCTGTGAT GCCGCTAAGT GGTCTGGATA AGAAACCTGA GCGCCGCGCC
GTGATGCTGG ACATTACCTG TGACTCTGAC GGCACTGTGG ATCAGTACGT AGATGGTCAG
GGTATCGAAA CCACACTGCC GGTACCTGCG TGGAGCGCTG AGAGCCCATA TCTTATCGGT
TTCTTCCTGG TGGGTGCCTA CCAGGAGATC CTCGGGGATA TGCATAACCT GTTCGGCGAT
ACTAACTCTG CCGTGGTGCG ACTGGACGAC GATGGCCTGG TGAATATCGA GTCGGTTCTG
GCCGGTGATA CGGTTGCCGA TGTGCTGCGT TACGTTAACC TGGACGCCGT CTCTTTCATG
CGTACCTATG AGGAGCTGGT GAACCTGCAC ATTCAGGAAG ATGAGCGCGC CAATATTCTC
GAAGAGTTGC AGATTGGACT GAAGGGCTAC ACCTATCTGG AAGATTTCTC CTGA
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| Protein sequence | MSNWSIKDAY VGYNVNYWSS GLYGISEAGE VTVSPDPNHP EHTIGLNELA KDMVKSGVAL
PVLVRFPQIL HHRVNSLCNA FNQAITRYDY QSDYLLVYPI KVNQQQTVVE EILASQVSKE
VPQLGLEAGS KPELMAVLAM AQKASSVIIC NGYKDVEYIR LALIGEKLGH QVYIVLEKLS
ELKVVLEEAK KLGVTPRLGL RVRLAFQGKG KWQASGGEKS KFGLSAAQVL NVINSLKDED
MLDSLQLLHF HLGSQIANIR DIRSGVSEAG RFYCELQKMG ANVKCFDVGG GLAVDYDGTR
SQSSNSMNYG LTEYANNIVS VLNDMCREHD QPMPRLISES GRYLTAHHAV LITDVIGTEA
YKPEDLQAPD EEAPQQLKNM WDSWGEVSGR ADQRALIEIY HDVQSDLAEV HSLFALGQMS
LSDRAWAEQM NLRVCYELKG VMSGKYRFHR PVIDELNEKL ADKFFVNFSL FQSLPDAWGI
DQVFPVMPLS GLDKKPERRA VMLDITCDSD GTVDQYVDGQ GIETTLPVPA WSAESPYLIG
FFLVGAYQEI LGDMHNLFGD TNSAVVRLDD DGLVNIESVL AGDTVADVLR YVNLDAVSFM
RTYEELVNLH IQEDERANIL EELQIGLKGY TYLEDFS
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