Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1605 |
Symbol | |
ID | 4923238 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1836749 |
End bp | 1837990 |
Gene Length | 1242 bp |
Protein Length | 413 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640163167 |
Product | beta-ketoacyl synthase |
Protein accession | YP_001093731 |
Protein GI | 127512534 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase |
TIGRFAM ID | [TIGR03150] beta-ketoacyl-acyl-carrier-protein synthase II |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000914371 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000913501 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGTCTAAAC GTCGTGTAGT CGTCACAGGT ATTGGTCTCG TGACCCCTGT GGGCAATACC GTAGAGGCGT CCTGGAAAGC CCTGCTTGCG GGACAGAGCG GTATCGCACC GATAACCAAA TTTGATGCCA GCGAGTTCTC TACTCGTTTT AGCGGCTCGG TCAAAGATTT TGACGTAGAG CAGTACCTGC CAAAGAAAGA AGCCCGCAAG ATGGATCTCT TCATCCAATA CGGCATGGCG GCAGGTATCC AGGCGATCCA AGATGCCGGT TTGAATATGG AAGTGGAAGA TCCCACCCGT GTTGGTACAG CCATCGGCGC CGGTATGGGC GGTATGCCGC TGATCGAGGC GGCCCACTCA GCCTTGCTAA AGGGCGGTCC ACGCAAGATC TCGCCATTTT TCGTGCCGAG CACCATCATC AACATGATCG CTGGTCACCT GTCGATCAAG TACGGCATGA CAGGCCCTAA TTTCGCGGTT ACCACCGCCT GTACCACGGG CGTACATAAT ATCGGCTTTG CCGCACGTAC TATTGCTTAC GGCGATGCCG ACGTCATGAT TGCCGGTGGC GCAGAAGATG TGACCTGTCC GTTGGCCGTC GGCGGCTTCG GTTCGGCCAA GGCACTGTCG ACTCGTAACG AAGATCCTGT CGCCGCAAGT CGTCCTTGGG ACAAAGACAG AGATGGTTTT GTCATAGGTG ATGGCGCTGG CATCATGGTG ATGGAAGAGT ATGAGCACGC TAAGGCGCGC GGTGCGACCA TCTATGGTGA GCTGGTTGGT TTTGGTATGA GCGGCGACGC CTTCCATATG ACCTCGCCAC CGGCCGATGG AGCTGGCGCT GCCCTGGCGA TGGAAAATGC CATCAAAGAT GCGGCTATCG ACAAGCAGCT CGTGGGTTAC ATTAATGCCC ATGGTACTTC TACGCCAGCA GGTGATAAGG CCGAGGCCTC TGCGGTGAAG AGTGTGTTTG GCGACCATGC CTACAACCTG CTGGTCAGCT CGACCAAGTC GATGACAGGC CACCTTCTCG GCGCGGCTGG TGCAGTCGAG GCGATCATCA CCTTGCTTGC ACTGCGCGAT CAGATGATCC CGCCGACCAT CAACCTGGAT AATCCAGACG AAGGTTGCGA TCTTGATTTC GTGCCCCATA CGGCACGTAG TCACGCGTTC GATTACGCCC TGTGTAACTC GTTCGGCTTT GGTGGCACTA ACGGTTCACT GCTGTTTAAA CGTGGCGAGT AA
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Protein sequence | MSKRRVVVTG IGLVTPVGNT VEASWKALLA GQSGIAPITK FDASEFSTRF SGSVKDFDVE QYLPKKEARK MDLFIQYGMA AGIQAIQDAG LNMEVEDPTR VGTAIGAGMG GMPLIEAAHS ALLKGGPRKI SPFFVPSTII NMIAGHLSIK YGMTGPNFAV TTACTTGVHN IGFAARTIAY GDADVMIAGG AEDVTCPLAV GGFGSAKALS TRNEDPVAAS RPWDKDRDGF VIGDGAGIMV MEEYEHAKAR GATIYGELVG FGMSGDAFHM TSPPADGAGA ALAMENAIKD AAIDKQLVGY INAHGTSTPA GDKAEASAVK SVFGDHAYNL LVSSTKSMTG HLLGAAGAVE AIITLLALRD QMIPPTINLD NPDEGCDLDF VPHTARSHAF DYALCNSFGF GGTNGSLLFK RGE
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