| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1589 |
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| Symbol | rbgA |
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| ID | 4922940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1818553 |
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| End bp | 1819494 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163151 |
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| Product | ribosomal biogenesis GTPase |
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| Protein accession | YP_001093715 |
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| Protein GI | 127512518 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1161] Predicted GTPases |
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| TIGRFAM ID | [TIGR03596] ribosome biogenesis GTP-binding protein YlqF |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.246818 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAATTC AGTGGTTTCC AGGCCATATG CACAAGGCGC GCAAAGAGAT AGCAGAGGTG
ATGCCTCAGG TCGATCTAGT GATCGAGGTA CTCGACGCCC GTATCCCTTA CAGCAGCGAA
AACCCTATGG TCACCAGTTT GCGCGGTAAC AGACCCTGTA TCAAACTGCT CAACAAGTCA
GATCTGGCCG ATCCCGAGAT CACCCAACGC TGGATTGACT ATCTGGAGCA AGAGCAAGGG
GTAAAGGCGA TGGCCATCAC CACCTTGCAG GCTGCCCAGG TGCGTAAGGT CCCCGAACTC
TGCCGTAAGC TGGTGCCTAG TCGCGACAAG ATAGAGAAAG ATATCCGCAC CATGATCATG
GGGATCCCTA ACGTAGGTAA ATCAACCATT ATCAATACCT TGGCAGGAAG AGTCATCGCC
AAAACGGGTA ATGAGCCTGC GGTGACCAAG ACCCAGCAGC GTATCAATCT GAAAAATGGC
ATAGTGCTGT CAGACACCCC GGGCATTCTC TGGCCTAAAG TAGACAACGA GGCCAGCGGC
TATCGCCTGG CGGTGACCGG CGCCATCAAA GATACGGCTA TGGAATATGA AGATGTGGCC
ATGTTCGCCG CCGAATACTT CCTCAAGGCC TATCCCGATG CCATGCTTGA GCGTTATAAG
CTTAAAGAAT TACCCAATGA CGATATCGGC CTGCTCGAAG CGATCGGCCG TAAGCGCGGC
GCGCTGAGAC CGGGTGGCAG AATCGATCTG CACAAAGCTT CTGAACTCCT GTTGCATGAG
TTCCGCTCGG GTAAGATAGG CCAGTTGTCA CTGGAGACTC CAGAGATGGC CGAGGCAGAG
AAAGCGGAAG TGGCTCGCAT CCTGGCCGAG AAAGAGGCCG AGAAACAGGC CAAAATAGAG
GCCGAGCGCC TGAAACGTTC CGGCGTTCGT CATAACGACT AA
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| Protein sequence | MAIQWFPGHM HKARKEIAEV MPQVDLVIEV LDARIPYSSE NPMVTSLRGN RPCIKLLNKS
DLADPEITQR WIDYLEQEQG VKAMAITTLQ AAQVRKVPEL CRKLVPSRDK IEKDIRTMIM
GIPNVGKSTI INTLAGRVIA KTGNEPAVTK TQQRINLKNG IVLSDTPGIL WPKVDNEASG
YRLAVTGAIK DTAMEYEDVA MFAAEYFLKA YPDAMLERYK LKELPNDDIG LLEAIGRKRG
ALRPGGRIDL HKASELLLHE FRSGKIGQLS LETPEMAEAE KAEVARILAE KEAEKQAKIE
AERLKRSGVR HND
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