Gene Shew_1579 details

Gene Information

• Locus tag: Shew_1579
• Symbol: tmk
• ID: 4922373
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella loihica PV-4
• Kingdom: Bacteria
• Replicon accession: NC_009092
• Strand: +
• Start bp: 1809248
• End bp: 1809880
• Gene Length: 633 bp
• Protein Length: 210 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 640163141
• Product: thymidylate kinase
• Protein accession: YP_001093705
• Protein GI: 127512508
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0125] Thymidylate kinase
• TIGRFAM ID: [TIGR00041] thymidylate kinase

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 12
• Fosmid unclonability p-value: 0.756218
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGCAAA ACAGCGCGAA ATTTATCGTT ATCGAAGGAT TAGAAGGGGC TGGCAAGTCG 
AGTGCCATCG CCCTGGTGAG AGATTTTATC GAGAAACATA ACGGCGTACC GCCCGTGTGC 
ACCCGTGAAC CAGGCGGCAC GCCACTGGCA GAGCGCATTA GGGATCTGGT GAAGATTGCC 
GACCCTAATG ATCCCCTGTG TGATGAGTCA GAGTGTTTGC TCATCTATGC CGCCAGGGCG 
CAGCTGGTGG CCAACGTGAT AAAGCCGGCT TTGGCTCAGG GTAACTGGGT GCTGGGTGAC 
CGTCACAATC TCTCATCTCT GGCTTATCAA GGGGGGGGGC GTCAACTCAT GCCGCTGGTC 
GAGGCGGTGA GTCAGGCCAC CCTGAAAGAT TTTAAACCCG ATCTGACCCT ATACTTGGAT 
ATCGATCCTC AGCTTGGCTT GCAACGCGCC AGAGACAGGG GCGCCCTGGA TAGAATCGAG 
CAGCAGGCGC TGAGTTTCTT CGAGCGAGCC AGGGCAACTT ATTTGCAGCT GGCGGCGCGC 
GACGAGTCTA TCGTAGTGAT CGATGCCAGC CAGACGATGG CGCAGGTGCA TAAAGAGATC 
TTGGCCGTGT TGCAACGACA AGACTGGTCA TGA 

 

Protein sequence

MKQNSAKFIV IEGLEGAGKS SAIALVRDFI EKHNGVPPVC TREPGGTPLA ERIRDLVKIA 
DPNDPLCDES ECLLIYAARA QLVANVIKPA LAQGNWVLGD RHNLSSLAYQ GGGRQLMPLV 
EAVSQATLKD FKPDLTLYLD IDPQLGLQRA RDRGALDRIE QQALSFFERA RATYLQLAAR 
DESIVVIDAS QTMAQVHKEI LAVLQRQDWS