| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1570 |
|---|
| Symbol | |
|---|
| ID | 4924307 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1800815 |
|---|
| End bp | 1801306 |
|---|
| Gene Length | 492 bp |
|---|
| Protein Length | 163 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640163132 |
|---|
| Product | 17 kDa surface antigen |
|---|
| Protein accession | YP_001093696 |
|---|
| Protein GI | 127512499 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3133] Outer membrane lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000417711 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAAC CTACCTCCCG CCTCTTTCGC TTTATTTGGT CAGTTTTTAT CTTGCTTGCC
AGCCTAGGGC TGAGTGCTGG TGTCGGTGCC GCCTACGAGC GCAATCAAGC CGTCCCCGTC
GAGAAGGTAG AGTATGGTTA TGTCACCTCG GTACGTAACA TTACTCAGAC GCAGTTAGTG
GAAGATCGTA ACCAGGGCTG GCGCACATTT GGCGGCGCCT TGATAGGTGG CGTCATAGGG
CATCAATTTG GTGGCGGTAG CGGTCAGGAT GTTGCCACAG TATTGGGGGC CCTCATTGGT
GGCGGCATAG GCCATAATGC GGGCGGCGAT TACTATCAGC AGTTGAAGCT GGTGGAGCTG
ATGATACGTT ATGAAGATGG TCGGGAGGTA ATGGTGATTC AAGACCTGGA TCCCGGCATG
ATTTTCAACG TCGATGATGA GGTGCGCGTG GTCTACCTGC AGGGGGGCGT GCGAGTCGAC
CTGGCGATGT AG
|
|---|
| Protein sequence | MLKPTSRLFR FIWSVFILLA SLGLSAGVGA AYERNQAVPV EKVEYGYVTS VRNITQTQLV
EDRNQGWRTF GGALIGGVIG HQFGGGSGQD VATVLGALIG GGIGHNAGGD YYQQLKLVEL
MIRYEDGREV MVIQDLDPGM IFNVDDEVRV VYLQGGVRVD LAM
|
|---|
| |