Gene Shew_1570 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1570 
Symbol 
ID4924307 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1800815 
End bp1801306 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content55% 
IMG OID640163132 
Product17 kDa surface antigen 
Protein accessionYP_001093696 
Protein GI127512499 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3133] Outer membrane lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.17711e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGAAAC CTACCTCCCG CCTCTTTCGC TTTATTTGGT CAGTTTTTAT CTTGCTTGCC 
AGCCTAGGGC TGAGTGCTGG TGTCGGTGCC GCCTACGAGC GCAATCAAGC CGTCCCCGTC
GAGAAGGTAG AGTATGGTTA TGTCACCTCG GTACGTAACA TTACTCAGAC GCAGTTAGTG
GAAGATCGTA ACCAGGGCTG GCGCACATTT GGCGGCGCCT TGATAGGTGG CGTCATAGGG
CATCAATTTG GTGGCGGTAG CGGTCAGGAT GTTGCCACAG TATTGGGGGC CCTCATTGGT
GGCGGCATAG GCCATAATGC GGGCGGCGAT TACTATCAGC AGTTGAAGCT GGTGGAGCTG
ATGATACGTT ATGAAGATGG TCGGGAGGTA ATGGTGATTC AAGACCTGGA TCCCGGCATG
ATTTTCAACG TCGATGATGA GGTGCGCGTG GTCTACCTGC AGGGGGGCGT GCGAGTCGAC
CTGGCGATGT AG
 
Protein sequence
MLKPTSRLFR FIWSVFILLA SLGLSAGVGA AYERNQAVPV EKVEYGYVTS VRNITQTQLV 
EDRNQGWRTF GGALIGGVIG HQFGGGSGQD VATVLGALIG GGIGHNAGGD YYQQLKLVEL
MIRYEDGREV MVIQDLDPGM IFNVDDEVRV VYLQGGVRVD LAM