Gene Shew_1569 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1569 
Symbolaat 
ID4922593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1800052 
End bp1800762 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content55% 
IMG OID640163131 
Productleucyl/phenylalanyl-tRNA--protein transferase 
Protein accessionYP_001093695 
Protein GI127512498 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG2360] Leu/Phe-tRNA-protein transferase 
TIGRFAM ID[TIGR00667] leucyl/phenylalanyl-tRNA--protein transferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000020464 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.81248 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACTCAC TGTCCTATTT AAATCATGAG CTGGCAAAGT TCCCTTCGCC GGAGTTTGCC 
CTAACCGATC CAAACGGACT CTTGGCCATC GGCGGCGATC TACACCCCAA GCGTCTGCTT
AACGCCTACT ATGAGGGGAT CTTCCCCTGG TTTAACGAAA ACGATCCCAT CCTCTGGTGG
TCGCCCGACC CCCGCGCCGT ATTTGTACCC GGTTCACTCA AGGTCAGTCG CAGCCTGAAG
CGCGATATCA AACGCCGTCA GTGGCGCTTC AGCGTCAATC GCGCCTTTAA CAGTGTAATT
GAGCACTGTG CCCTCACCCG CCAAGGCAAG GAAGGTACCT GGATCACCTT AGAGATACAG
CAGGCCTATA AGGCGCTACA CAAGTACAAC AAGGCCCACT CGATTGAGGT ATGGGACGGC
GATAAGCTGA TTGGCGGCCT CTATGGGGTG GCCATCGGCC AGGTGTTTTG CGGCGAGTCC
ATGTTTCACC TGCAGAGCAA TGCCTCCAAG GCAGCCATGG CCATGCTGCA CCAACACCTG
CTATCACACA GATACCGACT GATCGACGCC CAGGTCATGA ATCCTCATCT GGCATCCCTG
GGTGCCAAGG CATTAAAGCG AGCGGATTTC ATCAACCTAT TGAAGCGTTT TCGCGATATC
GAGGTTGCCA GCGATGCCTG GCACCCACAA GAGGTGCAGA TTGAACTCTA G
 
Protein sequence
MNSLSYLNHE LAKFPSPEFA LTDPNGLLAI GGDLHPKRLL NAYYEGIFPW FNENDPILWW 
SPDPRAVFVP GSLKVSRSLK RDIKRRQWRF SVNRAFNSVI EHCALTRQGK EGTWITLEIQ
QAYKALHKYN KAHSIEVWDG DKLIGGLYGV AIGQVFCGES MFHLQSNASK AAMAMLHQHL
LSHRYRLIDA QVMNPHLASL GAKALKRADF INLLKRFRDI EVASDAWHPQ EVQIEL