| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1560 |
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| Symbol | mnmA |
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| ID | 4921752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1790570 |
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| End bp | 1791685 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163122 |
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| Product | tRNA-specific 2-thiouridylase MnmA |
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| Protein accession | YP_001093686 |
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| Protein GI | 127512489 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000033565 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGCAA TCGAACCCAA TCCAAACGGT AAAAAAGTGA TCGTCGGCAT GTCCGGCGGT
GTCGACTCAT CTGTTTCGGC GTATCTCCTC ATGCAACAGG GCTATCAGGT CGAAGGCCTG
TTCATGAAAA ACTGGGAAGA GGACGATACC GACGAGTATT GTGCTGCCGC CGAAGATCTT
AAAGATGCCC AAGCCGTTTG CGACAAACTG GGGATCAAGC TGCACACGGT TAACTTTGCC
GCCGAATACT GGGACAACGT GTTCGAGTAC TTCCTCGCCG AATACAAGGC GGGCCGTACC
CCTAACCCAG ACATCATGTG CAACAAAGAG ATCAAGTTTA AGGCGTTTCT CGAGTTTGCC
GACGACATCC TGGACGCCGA CTACATCGCC ATGGGCCACT ATGTGCGCCG CAGCGATGCC
TCGGGTCAAA GCCAGATGCT ACGTGGCGTC GATGGCAACA AAGATCAGAG CTACTTCCTC
TACACCTTGA GCCATGAGCA GATCGCCCGC TCCCTGTTCC CTGTGGGTGA ACTGGAGAAG
AGCGAAGTGC GTGAAATTGC CAAAGAGATG GGGCTGGTTA CCCATGACAA GAAGGACAGC
ACAGGCATCT GCTTTATCGG CGAGCGTAAG TTCACCGATT TTCTGCGCAC CTTCCTGCCC
GCGCAGCCTG GCAAGATAGA GACAGCCGAA GGCGAAGTCA TAGGTGAGCA CCAAGGCTTG
ATGTACCACA CCCTGGGTCA GCGCAAGGGG CTTGGGATCG GCGGCATGAA GAACAGCAAC
GACGATCCTT GGTATGTGGT CGATAAAGAT CTCGAACGTA ACGTGTTGGT TGTCGGTCAA
GGTGGTAAGC ACCCTCGCCT CATGTCGGTG GGTTTCTACG CCGATCAGCT ACACTGGGTC
GATAGAACAG GGCCTAATGA TGGCGCCAAG ATCACGGTCA AGACACGCTA CCGTCAGCAG
GATGTGGCCT GTACCCTCAC CTATGAAGGG GACGATCGCA TCAAGGTGAT CTTCGACGAG
CCAGTTGCCG CCGTAACCCC TGGTCAGTCG GCCGTGTTTT ATGACGGCGA AGTCTGTCTG
GGCGGCGGTA TCATAGACAG TCTGATTAGA GAGTAA
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| Protein sequence | MAAIEPNPNG KKVIVGMSGG VDSSVSAYLL MQQGYQVEGL FMKNWEEDDT DEYCAAAEDL
KDAQAVCDKL GIKLHTVNFA AEYWDNVFEY FLAEYKAGRT PNPDIMCNKE IKFKAFLEFA
DDILDADYIA MGHYVRRSDA SGQSQMLRGV DGNKDQSYFL YTLSHEQIAR SLFPVGELEK
SEVREIAKEM GLVTHDKKDS TGICFIGERK FTDFLRTFLP AQPGKIETAE GEVIGEHQGL
MYHTLGQRKG LGIGGMKNSN DDPWYVVDKD LERNVLVVGQ GGKHPRLMSV GFYADQLHWV
DRTGPNDGAK ITVKTRYRQQ DVACTLTYEG DDRIKVIFDE PVAAVTPGQS AVFYDGEVCL
GGGIIDSLIR E
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