Gene Shew_1546 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1546 
Symbol 
ID4922774 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1774644 
End bp1775069 
Gene Length426 bp 
Protein Length141 aa 
Translation table11 
GC content53% 
IMG OID640163108 
Productthioesterase superfamily protein 
Protein accessionYP_001093672 
Protein GI127512475 
COG category[I] Lipid transport and metabolism 
COG ID[COG1607] Acyl-CoA hydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.125376 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCTAA CCGATACAGA AACTCAGTAT TCTGACGCCA TTCGCGCGCG CATCGCGCAG 
TCAGAAGCCC GGGTGATCAA AGCGATTTTT CCCTCTATTA CCAACCATCA CAACACTCTC
TTTGGTGGTG AGGCCTTGGC CTGGATGGAT GAGACCGCCT TTATCGCCGC GACCCGCTTC
TGCCGCAAGA CACTTGTAAC CGTCAGTTCA GACCGTATCG ACTTCAATAA GTCGATTCCT
GCCGGCACCC TGGCAGAGAT CATCGCCAAC GTGATCTATG TGGGTAACAC CTCCCTCAAG
GTTGAGGTCA ACATCTTCGT CGAAGATATG TACCAAGATC ATCGTGAGCA TGCCATTCGC
GGCGTCTTCA CCTTTGTGGC GCTGGATGAA GATCGTAAAC CCACTAAGGT GTGGAGCGAA
GCGTAA
 
Protein sequence
MPLTDTETQY SDAIRARIAQ SEARVIKAIF PSITNHHNTL FGGEALAWMD ETAFIAATRF 
CRKTLVTVSS DRIDFNKSIP AGTLAEIIAN VIYVGNTSLK VEVNIFVEDM YQDHREHAIR
GVFTFVALDE DRKPTKVWSE A