Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1546 |
Symbol | |
ID | 4922774 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1774644 |
End bp | 1775069 |
Gene Length | 426 bp |
Protein Length | 141 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640163108 |
Product | thioesterase superfamily protein |
Protein accession | YP_001093672 |
Protein GI | 127512475 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1607] Acyl-CoA hydrolase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.125376 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCCCTAA CCGATACAGA AACTCAGTAT TCTGACGCCA TTCGCGCGCG CATCGCGCAG TCAGAAGCCC GGGTGATCAA AGCGATTTTT CCCTCTATTA CCAACCATCA CAACACTCTC TTTGGTGGTG AGGCCTTGGC CTGGATGGAT GAGACCGCCT TTATCGCCGC GACCCGCTTC TGCCGCAAGA CACTTGTAAC CGTCAGTTCA GACCGTATCG ACTTCAATAA GTCGATTCCT GCCGGCACCC TGGCAGAGAT CATCGCCAAC GTGATCTATG TGGGTAACAC CTCCCTCAAG GTTGAGGTCA ACATCTTCGT CGAAGATATG TACCAAGATC ATCGTGAGCA TGCCATTCGC GGCGTCTTCA CCTTTGTGGC GCTGGATGAA GATCGTAAAC CCACTAAGGT GTGGAGCGAA GCGTAA
|
Protein sequence | MPLTDTETQY SDAIRARIAQ SEARVIKAIF PSITNHHNTL FGGEALAWMD ETAFIAATRF CRKTLVTVSS DRIDFNKSIP AGTLAEIIAN VIYVGNTSLK VEVNIFVEDM YQDHREHAIR GVFTFVALDE DRKPTKVWSE A
|
| |