| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1545 |
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| Symbol | |
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| ID | 4920977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1773734 |
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| End bp | 1774393 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163107 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001093671 |
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| Protein GI | 127512474 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.505974 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTCG AAAACTTGCA CATCATCATC GCAGATGATC ATCCATTATT TAGGAATGCG
CTGCGACAGG CATTGAGCGG CGCCTTTGCC GACACCCAAT GGTTTGAGGC CGACAGCGCC
GAAGCCCTAC AAGGCCTATT GGAACAGGGC AACACCGCCT ATGACTTAGT ATTGCTGGAT
CTACAGATGC CCGGCTCCCA TGGCTATTCC ACCTTAATAC ACCTAAGAAC CCATTTCCCC
GAACTGCCTG TGGTGGTGAT CTCCGCTCAC GAAGATGCCA TGACCATCAG CCGCGCCGTT
CACTATGGTA GCGCCGGGTT TATTCCCAAG TCTGCCTCCA TGGAAACCCT CTCAGAGGCA
CTCACGGCTG TGCTCTATGG CGATATTTGG CTACCAGACA ATATAGAATT GCAAGAGATC
AACGAAGATG CCACGGATCA GATGGCGGCC AAGCTCGCCG ATCTCACGCC GCAACAGTAT
AAGGTGCTGC AGATGTTTGC CGAAGGCCTG CTCAACAAGC AGATCGCCTA TGACCTGGGC
GTATCCGAGG CCACCATCAA GGCCCACGCC ACCGCCATCT TTAGAAAACT CGGGGTGAGA
AATCGCACCC AGGCAGTTAT CGCCCTGCAG CAGCTGGAGA TGGAAAAGGT CGAGCTTTAA
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| Protein sequence | MKLENLHIII ADDHPLFRNA LRQALSGAFA DTQWFEADSA EALQGLLEQG NTAYDLVLLD
LQMPGSHGYS TLIHLRTHFP ELPVVVISAH EDAMTISRAV HYGSAGFIPK SASMETLSEA
LTAVLYGDIW LPDNIELQEI NEDATDQMAA KLADLTPQQY KVLQMFAEGL LNKQIAYDLG
VSEATIKAHA TAIFRKLGVR NRTQAVIALQ QLEMEKVEL
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