| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1544 |
|---|
| Symbol | |
|---|
| ID | 4923779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1772921 |
|---|
| End bp | 1773580 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640163106 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001093670 |
|---|
| Protein GI | 127512473 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACCTT ATCCTATAAA AAAGTGTACT ATGGGGTATC AAAAGTTAGA GGAGGTGTTT
ATGCGACCAT CGAGTTTGAG AAAGCGGCAG AAGTATTTGC AGGTAGCCGC AGAACTCTTT
TTAGAGCAGG GCTATGAAGG CACCAGCCTA GATCAGTTGA TAGAGCATTG TGGTGGCTCA
AAGCTTACCT TGTATAACTA CTTTAATGAT AAACAAGGCC TGTTAAAAGC CGTGGTTGTT
GAACTGACCG AACGCCTGCA ACTGGGGTTA AGCATCGACG TAGATGCCGA TAGAGTATTT
AGGGAAGAGT TATTGTCTTT CGCGTTGAAA TATTTGGAGT TTATCTATCA CCCTGAGCTC
TTGAAGTTGG CGCGCTTACT GATGACACAG ACAAAAACCG CACCGGAATT AGTGGCATTT
TTTCTTGAGC GAAGTTCAGG CCATTCTCAA CAAGCATTAC AGGATTATTT GATGCATCGA
CAAGCGATGG ACAAACTCGT CATCACAGAC TTGGCCATAG CGAGCGAACA ATTTCTCGGT
GCATTAAAGG GAAATCGTCA TTTCGAAGCC TTATTCGGTG GGCAAATGTT GACATCTGAT
GAAATGAAAA TTTACGCAAA GCATGCAGTA GATAACTTTA TTCGCTGTTA TCAATCTTGA
|
|---|
| Protein sequence | MQPYPIKKCT MGYQKLEEVF MRPSSLRKRQ KYLQVAAELF LEQGYEGTSL DQLIEHCGGS
KLTLYNYFND KQGLLKAVVV ELTERLQLGL SIDVDADRVF REELLSFALK YLEFIYHPEL
LKLARLLMTQ TKTAPELVAF FLERSSGHSQ QALQDYLMHR QAMDKLVITD LAIASEQFLG
ALKGNRHFEA LFGGQMLTSD EMKIYAKHAV DNFIRCYQS
|
|---|
| |