Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1540 |
Symbol | |
ID | 4922268 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1768212 |
End bp | 1769342 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640163102 |
Product | alcohol dehydrogenase |
Protein accession | YP_001093666 |
Protein GI | 127512469 |
COG category | [C] Energy production and conversion |
COG ID | [COG1062] Zn-dependent alcohol dehydrogenases, class III |
TIGRFAM ID | [TIGR02818] S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.47275 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGACA AGTTTATTAA ATCTAAGGCC GCCATCGCCT GGGGACCGGG CCAGCCATTA TCGGTAGAAG AGGTGGATGT GATGTATCCC AAGGCCGGTG AGGTGTTGGT GAAGATAGTC GCAACCGGTG TCTGCCATAC CGATGCCTTT ACCCTCTCGG GTGACGATCC TGAAGGTGTC TTTCCGGCGA TCCTGGGCCA CGAAGGCGGC GGTATCGTCG AGGCGGTCGG TGAAGGTGTC ACCAGTGTGG CGGTAGGGGA TCACGTGATC CCGCTTTATA CCCCTGAGTG CGGCGAGTGT AAGTTCTGTA AGTCGGGTAA GACTAACCTG TGTCAGAAGA TCCGCGAGAC TCAAGGCAAA GGCTTGATGC CAGATGGCAC CACGCGTTTC TTCAAAGATG GTCAGCCTAT CTTCCATTAC ATGGGCTGCT CAACTTTCTC AGAATATACC GTACTACCAG AGATCTCATT GGCCAAGGTT AATCCCGAGG CGCCACTGGA AGAGGTGTGT CTGCTAGGTT GCGGTGTGAC CACTGGCATG GGCGCGGTAC TCAACACGGC TAAGGTTGAG CCGGGGGCGA GCGTCGCCAT CTTCGGGATC GGTGGCATAG GCCTGTCGGC CATCATTGGT GCGACTATGG CGGGCGCTAG CCGCATCATC GCCATCGATA TCAACGAGAG CAAGTTTGAG CTGGCCCGTC AGCTAGGGGC AACCGATTGC ATCAACCCCA AAAACTATGA CAAGCCTATC CAGGAAGTGA TTGTTGAACT GACCGATGGC GGCGTGGATT ACTCCTTCGA GTGTATCGGT AATGTGGATG TGATGCGCTC GGCGCTGGAG TGCTGCCATA AGGGGTGGGG CGAATCTGTG ATTATCGGTG TCGCAGGCGC CGGCCAGGAG ATCTCGACCC GTCCATTCCA GCTGGTGACC GGACGCGTCT GGCGCGGCAG TGCCTTCGGC GGCGTGAAGG GACGCTCGGA GCTGCCTGAG ATCGTTGAGA AGTACCTGCG CGGCGAGTTT AAGCTTAGCG ACTTTATCAC TCACACCATG GCGCTGGAGG AGATCAACAC AGCCTTCGAC CTCATGCATG AGGGTAAGAG TATCCGCTCT GTGGTGCACT TTAACCGATA G
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Protein sequence | MTDKFIKSKA AIAWGPGQPL SVEEVDVMYP KAGEVLVKIV ATGVCHTDAF TLSGDDPEGV FPAILGHEGG GIVEAVGEGV TSVAVGDHVI PLYTPECGEC KFCKSGKTNL CQKIRETQGK GLMPDGTTRF FKDGQPIFHY MGCSTFSEYT VLPEISLAKV NPEAPLEEVC LLGCGVTTGM GAVLNTAKVE PGASVAIFGI GGIGLSAIIG ATMAGASRII AIDINESKFE LARQLGATDC INPKNYDKPI QEVIVELTDG GVDYSFECIG NVDVMRSALE CCHKGWGESV IIGVAGAGQE ISTRPFQLVT GRVWRGSAFG GVKGRSELPE IVEKYLRGEF KLSDFITHTM ALEEINTAFD LMHEGKSIRS VVHFNR
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